Mercurial > repos > peterjc > blast_rbh
changeset 11:4733e4ea4dab draft
Uploaded v0.1.2c, same defaults in blast_rbh.py as blast_rbh.xml
author | peterjc |
---|---|
date | Thu, 14 Aug 2014 07:11:59 -0400 |
parents | 982458013bdb |
children | 661276ad882e |
files | tools/blast_rbh/README.rst tools/blast_rbh/blast_rbh.py |
diffstat | 2 files changed, 5 insertions(+), 4 deletions(-) [+] |
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--- a/tools/blast_rbh/README.rst Thu Jul 31 05:01:51 2014 -0400 +++ b/tools/blast_rbh/README.rst Thu Aug 14 07:11:59 2014 -0400 @@ -52,6 +52,7 @@ v0.1.0 - Initial Test Tool Shed release, targetting NCBI BLAST+ 2.2.29 v0.1.1 - Supports self-comparison, sometimes useful for spotting duplicates. v0.1.2 - Using optparse for command line API. + - Tool definition now embeds citation information. - Fixed Tool Shed dependency definition. ======= ======================================================================
--- a/tools/blast_rbh/blast_rbh.py Thu Jul 31 05:01:51 2014 -0400 +++ b/tools/blast_rbh/blast_rbh.py Thu Aug 14 07:11:59 2014 -0400 @@ -47,11 +47,11 @@ default=None, help="BLAST task (e.g. blastp, blastn, megablast)") parser.add_option("-i","--identity", dest="min_identity", - default="0", - help="Minimum percentage identity (optional, default 0)") + default="70", + help="Minimum percentage identity (optional, default 70)") parser.add_option("-c", "--coverage", dest="min_coverage", - default="0", - help="Minimum HSP coverage (optional, default 0)") + default="50", + help="Minimum HSP coverage (optional, default 50)") parser.add_option("-o", "--output", dest="output", default=None, metavar="FILE", help="Output filename")