# HG changeset patch
# User peterjc
# Date 1408014719 14400
# Node ID 4733e4ea4dab25788bac44abff5e171787e8fa76
# Parent  982458013bdb4e7bae8fc47d762ec240586dbdea
Uploaded v0.1.2c, same defaults in blast_rbh.py as blast_rbh.xml

diff -r 982458013bdb -r 4733e4ea4dab tools/blast_rbh/README.rst
--- a/tools/blast_rbh/README.rst	Thu Jul 31 05:01:51 2014 -0400
+++ b/tools/blast_rbh/README.rst	Thu Aug 14 07:11:59 2014 -0400
@@ -52,6 +52,7 @@
 v0.1.0  - Initial Test Tool Shed release, targetting NCBI BLAST+ 2.2.29
 v0.1.1  - Supports self-comparison, sometimes useful for spotting duplicates.
 v0.1.2  - Using optparse for command line API.
+        - Tool definition now embeds citation information.
         - Fixed Tool Shed dependency definition.
 ======= ======================================================================
 
diff -r 982458013bdb -r 4733e4ea4dab tools/blast_rbh/blast_rbh.py
--- a/tools/blast_rbh/blast_rbh.py	Thu Jul 31 05:01:51 2014 -0400
+++ b/tools/blast_rbh/blast_rbh.py	Thu Aug 14 07:11:59 2014 -0400
@@ -47,11 +47,11 @@
                   default=None,
                   help="BLAST task (e.g. blastp, blastn, megablast)")
 parser.add_option("-i","--identity", dest="min_identity",
-                  default="0",
-                  help="Minimum percentage identity (optional, default 0)")
+                  default="70",
+                  help="Minimum percentage identity (optional, default 70)")
 parser.add_option("-c", "--coverage", dest="min_coverage",
-                  default="0",
-                  help="Minimum HSP coverage (optional, default 0)")
+                  default="50",
+                  help="Minimum HSP coverage (optional, default 50)")
 parser.add_option("-o", "--output", dest="output",
                   default=None, metavar="FILE",
                   help="Output filename")