Mercurial > repos > peterjc > blast_rbh
changeset 9:95190ebd4657 draft
Uploaded v0.1.2a, include missing test file
| author | peterjc |
|---|---|
| date | Wed, 11 Jun 2014 06:34:14 -0400 |
| parents | d3eb5cda7270 |
| children | 982458013bdb |
| files | test-data/rbh_blastp_k12_self.tabular tools/blast_rbh/README.rst tools/blast_rbh/blast_rbh.py |
| diffstat | 3 files changed, 8 insertions(+), 2 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/rbh_blastp_k12_self.tabular Wed Jun 11 06:34:14 2014 -0400 @@ -0,0 +1,5 @@ +#A_id B_id A_length B_length A_qcovhsp B_qcovhsp length pident bitscore +gi|16127997|ref|NP_414544.1| NP_414544_near_copy 310 309 99 100 309 99.68 638 +NP_414544_near_copy gi|16127997|ref|NP_414544.1| 309 310 100 99 309 99.68 638 +NP_414546_near_copy_1 NP_414546_near_copy_2 99 100 99 98 98 100.00 197 +NP_414546_near_copy_2 NP_414546_near_copy_1 100 99 98 99 98 100.00 197
--- a/tools/blast_rbh/README.rst Tue Jun 10 10:09:50 2014 -0400 +++ b/tools/blast_rbh/README.rst Wed Jun 11 06:34:14 2014 -0400 @@ -64,7 +64,7 @@ For making the "Galaxy Tool Shed" http://toolshed.g2.bx.psu.edu/ tarball I use the following command from the Galaxy root folder:: - $ tar -czf blast_rbh.tar.gz tools/blast_rbh/README.rst tools/blast_rbh/blast_rbh.xml tools/blast_rbh/blast_rbh.py tools/blast_rbh/repository_dependencies.xml test-data/rhodopsin_nucs.fasta test-data/rhodopsin_proteins.fasta test-data/three_human_mRNA.fasta test-data/four_human_proteins.fasta test-data/k12_edited_proteins.fasta test-data/k12_ten_proteins.fasta test-data/rbh_megablast_rhodopsin_nucs_vs_three_human_mRNA.tabular test-data/rbh_blastn_three_human_mRNA_vs_rhodopsin_nucs.tabular test-data/rbh_blastp_four_human_vs_rhodopsin_proteins.tabular test-data/rbh_none.tabular test-data/rbh_tblastx_rhodopsin_nucs_vs_three_human_mRNA.tabular test-data/rbh_blastp_k12.tabular + $ tar -czf blast_rbh.tar.gz tools/blast_rbh/README.rst tools/blast_rbh/blast_rbh.xml tools/blast_rbh/blast_rbh.py tools/blast_rbh/repository_dependencies.xml test-data/rhodopsin_nucs.fasta test-data/rhodopsin_proteins.fasta test-data/three_human_mRNA.fasta test-data/four_human_proteins.fasta test-data/k12_edited_proteins.fasta test-data/k12_ten_proteins.fasta test-data/rbh_megablast_rhodopsin_nucs_vs_three_human_mRNA.tabular test-data/rbh_blastn_three_human_mRNA_vs_rhodopsin_nucs.tabular test-data/rbh_blastp_four_human_vs_rhodopsin_proteins.tabular test-data/rbh_none.tabular test-data/rbh_tblastx_rhodopsin_nucs_vs_three_human_mRNA.tabular test-data/rbh_blastp_k12.tabular test-data/rbh_blastp_k12_self.tabular Check this worked:: @@ -85,6 +85,7 @@ test-data/rbh_none.tabular test-data/rbh_tblastx_rhodopsin_nucs_vs_three_human_mRNA.tabular test-data/rbh_blastp_k12.tabular + test-data/rbh_blastp_k12_self.tabular Licence (MIT)
--- a/tools/blast_rbh/blast_rbh.py Tue Jun 10 10:09:50 2014 -0400 +++ b/tools/blast_rbh/blast_rbh.py Wed Jun 11 06:34:14 2014 -0400 @@ -30,7 +30,7 @@ if "--version" in sys.argv[1:]: #TODO - Capture version of BLAST+ binaries too? - print "BLAST RBH v0.1.1" + print "BLAST RBH v0.1.2" sys.exit(0) #Parse Command Line