# HG changeset patch
# User peterjc
# Date 1406797311 14400
# Node ID 982458013bdb4e7bae8fc47d762ec240586dbdea
# Parent 95190ebd4657b1cd6eddb8dd2d7f2ff625083a7e
Uploaded v0.1.2b, fixed dependency definition
diff -r 95190ebd4657 -r 982458013bdb tools/blast_rbh/README.rst
--- a/tools/blast_rbh/README.rst Wed Jun 11 06:34:14 2014 -0400
+++ b/tools/blast_rbh/README.rst Thu Jul 31 05:01:51 2014 -0400
@@ -49,9 +49,10 @@
======= ======================================================================
Version Changes
------- ----------------------------------------------------------------------
-v0.1.0 - Initial public release, targetting NCBI BLAST+ 2.2.29
+v0.1.0 - Initial Test Tool Shed release, targetting NCBI BLAST+ 2.2.29
v0.1.1 - Supports self-comparison, sometimes useful for spotting duplicates.
v0.1.2 - Using optparse for command line API.
+ - Fixed Tool Shed dependency definition.
======= ======================================================================
@@ -64,7 +65,7 @@
For making the "Galaxy Tool Shed" http://toolshed.g2.bx.psu.edu/ tarball I use
the following command from the Galaxy root folder::
- $ tar -czf blast_rbh.tar.gz tools/blast_rbh/README.rst tools/blast_rbh/blast_rbh.xml tools/blast_rbh/blast_rbh.py tools/blast_rbh/repository_dependencies.xml test-data/rhodopsin_nucs.fasta test-data/rhodopsin_proteins.fasta test-data/three_human_mRNA.fasta test-data/four_human_proteins.fasta test-data/k12_edited_proteins.fasta test-data/k12_ten_proteins.fasta test-data/rbh_megablast_rhodopsin_nucs_vs_three_human_mRNA.tabular test-data/rbh_blastn_three_human_mRNA_vs_rhodopsin_nucs.tabular test-data/rbh_blastp_four_human_vs_rhodopsin_proteins.tabular test-data/rbh_none.tabular test-data/rbh_tblastx_rhodopsin_nucs_vs_three_human_mRNA.tabular test-data/rbh_blastp_k12.tabular test-data/rbh_blastp_k12_self.tabular
+ $ tar -czf blast_rbh.tar.gz tools/blast_rbh/README.rst tools/blast_rbh/blast_rbh.xml tools/blast_rbh/blast_rbh.py tools/blast_rbh/tool_dependencies.xml test-data/rhodopsin_nucs.fasta test-data/rhodopsin_proteins.fasta test-data/three_human_mRNA.fasta test-data/four_human_proteins.fasta test-data/k12_edited_proteins.fasta test-data/k12_ten_proteins.fasta test-data/rbh_megablast_rhodopsin_nucs_vs_three_human_mRNA.tabular test-data/rbh_blastn_three_human_mRNA_vs_rhodopsin_nucs.tabular test-data/rbh_blastp_four_human_vs_rhodopsin_proteins.tabular test-data/rbh_none.tabular test-data/rbh_tblastx_rhodopsin_nucs_vs_three_human_mRNA.tabular test-data/rbh_blastp_k12.tabular test-data/rbh_blastp_k12_self.tabular
Check this worked::
@@ -72,7 +73,7 @@
tools/blast_rbh/README.rst
tools/blast_rbh/blast_rbh.xml
tools/blast_rbh/blast_rbh.py
- tools/blast_rbh/repository_dependencies.xml
+ tools/blast_rbh/tool_dependencies.xml
test-data/rhodopsin_nucs.fasta
test-data/rhodopsin_proteins.fasta
test-data/three_human_mRNA.fasta
diff -r 95190ebd4657 -r 982458013bdb tools/blast_rbh/blast_rbh.xml
--- a/tools/blast_rbh/blast_rbh.xml Wed Jun 11 06:34:14 2014 -0400
+++ b/tools/blast_rbh/blast_rbh.xml Thu Jul 31 05:01:51 2014 -0400
@@ -232,4 +232,8 @@
This wrapper is available to install into other Galaxy Instances via the Galaxy
Tool Shed at http://toolshed.g2.bx.psu.edu/view/peterjc/blast_rbh
+
+ 10.1186/1471-2105-10-421
+
+
diff -r 95190ebd4657 -r 982458013bdb tools/blast_rbh/repository_dependencies.xml
--- a/tools/blast_rbh/repository_dependencies.xml Wed Jun 11 06:34:14 2014 -0400
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,4 +0,0 @@
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diff -r 95190ebd4657 -r 982458013bdb tools/blast_rbh/tool_dependencies.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/tools/blast_rbh/tool_dependencies.xml Thu Jul 31 05:01:51 2014 -0400
@@ -0,0 +1,6 @@
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