Mercurial > repos > peter-waltman > ucsc_cluster_tools
annotate cluster.tools/format.raw.TCGA.clinical.data.xml @ 2:b442996b66ae draft
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| author | peter-waltman |
|---|---|
| date | Wed, 27 Feb 2013 20:17:04 -0500 |
| parents | |
| children |
| rev | line source |
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| 2 | 1 <tool id="format_raw_TCGA_clinical_data" name="Format Raw TCGA Clinical Data" force_history_refresh="True"> |
| 2 <command interpreter="python">format.raw.TCGA.clinical.data.py | |
| 3 -d $dataset | |
| 4 -o ${output} | |
| 5 | |
| 6 </command> | |
| 7 <inputs> | |
| 8 <param name="dataset" type="data" format='tabular' label="Raw Clinical Data"/> | |
| 9 </inputs> | |
| 10 <outputs> | |
| 11 <data format="tabular" name="output" label="Formatted Clinical Data"/> | |
| 12 </outputs> | |
| 13 <help> | |
| 14 .. class:: infomark | |
| 15 | |
| 16 **Format Raw TCGA Clinical Data** - Tool to convert a raw clinical TCGA data file into a the format expected by the Survival Analysis tools | |
| 17 | |
| 18 **OUTPUT:** A new clinical data file that is a 2 column, tab-delimited file of the format that is expected by the Survival Analysis tools | |
| 19 | |
| 20 </help> | |
| 21 </tool> |