Mercurial > repos > peter-waltman > ucsc_cluster_tools
comparison cluster.tools/format.raw.TCGA.clinical.data.xml @ 2:b442996b66ae draft
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author | peter-waltman |
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date | Wed, 27 Feb 2013 20:17:04 -0500 |
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1:e25d2bece0a2 | 2:b442996b66ae |
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1 <tool id="format_raw_TCGA_clinical_data" name="Format Raw TCGA Clinical Data" force_history_refresh="True"> | |
2 <command interpreter="python">format.raw.TCGA.clinical.data.py | |
3 -d $dataset | |
4 -o ${output} | |
5 | |
6 </command> | |
7 <inputs> | |
8 <param name="dataset" type="data" format='tabular' label="Raw Clinical Data"/> | |
9 </inputs> | |
10 <outputs> | |
11 <data format="tabular" name="output" label="Formatted Clinical Data"/> | |
12 </outputs> | |
13 <help> | |
14 .. class:: infomark | |
15 | |
16 **Format Raw TCGA Clinical Data** - Tool to convert a raw clinical TCGA data file into a the format expected by the Survival Analysis tools | |
17 | |
18 **OUTPUT:** A new clinical data file that is a 2 column, tab-delimited file of the format that is expected by the Survival Analysis tools | |
19 | |
20 </help> | |
21 </tool> |