Mercurial > repos > peter-waltman > ucsc_cluster_tools
diff cluster.tools/format.raw.TCGA.clinical.data.xml @ 2:b442996b66ae draft
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author | peter-waltman |
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date | Wed, 27 Feb 2013 20:17:04 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/cluster.tools/format.raw.TCGA.clinical.data.xml Wed Feb 27 20:17:04 2013 -0500 @@ -0,0 +1,21 @@ +<tool id="format_raw_TCGA_clinical_data" name="Format Raw TCGA Clinical Data" force_history_refresh="True"> + <command interpreter="python">format.raw.TCGA.clinical.data.py +-d $dataset +-o ${output} + +</command> + <inputs> + <param name="dataset" type="data" format='tabular' label="Raw Clinical Data"/> + </inputs> + <outputs> + <data format="tabular" name="output" label="Formatted Clinical Data"/> + </outputs> +<help> +.. class:: infomark + +**Format Raw TCGA Clinical Data** - Tool to convert a raw clinical TCGA data file into a the format expected by the Survival Analysis tools + +**OUTPUT:** A new clinical data file that is a 2 column, tab-delimited file of the format that is expected by the Survival Analysis tools + +</help> +</tool>