Mercurial > repos > peter-waltman > ucsc_cluster_tools
view cluster.tools/format.raw.TCGA.clinical.data.xml @ 2:b442996b66ae draft
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author | peter-waltman |
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date | Wed, 27 Feb 2013 20:17:04 -0500 |
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<tool id="format_raw_TCGA_clinical_data" name="Format Raw TCGA Clinical Data" force_history_refresh="True"> <command interpreter="python">format.raw.TCGA.clinical.data.py -d $dataset -o ${output} </command> <inputs> <param name="dataset" type="data" format='tabular' label="Raw Clinical Data"/> </inputs> <outputs> <data format="tabular" name="output" label="Formatted Clinical Data"/> </outputs> <help> .. class:: infomark **Format Raw TCGA Clinical Data** - Tool to convert a raw clinical TCGA data file into a the format expected by the Survival Analysis tools **OUTPUT:** A new clinical data file that is a 2 column, tab-delimited file of the format that is expected by the Survival Analysis tools </help> </tool>