|
0
|
1 <?xml version="1.0"?>
|
|
|
2 <tool_dependency>
|
|
|
3 <package name="R" version="3.1.0">
|
|
|
4 <repository changeset_revision="cfa09c247b6e" name="package_r_3_1_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
|
|
|
5 </package>
|
|
|
6 <package name="deseq2" version="1.2.10">
|
|
|
7 <repository changeset_revision="97afd1582a0e" name="package_deseq2_1_2_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
|
|
|
8 </package>
|
|
|
9 <package name="diffbind" version="1.14.4">
|
|
1
|
10 <install version="1.0">
|
|
0
|
11 <actions>
|
|
|
12 <action type="setup_r_environment">
|
|
|
13 <repository changeset_revision="cfa09c247b6e" name="package_r_3_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
|
|
|
14 <package name="R" version="3.1.0" />
|
|
|
15 </repository>
|
|
|
16 <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/IRanges_1.20.6.tar.gz</package>
|
|
|
17 <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/XVector_0.2.0.tar.gz</package>
|
|
|
18 <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/limma_3.18.9.tar.gz</package>
|
|
|
19 <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/gtools_3.1.1.tar.gz</package>
|
|
|
20 <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/gdata_2.13.2.tar.gz</package>
|
|
|
21 <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/bitops_1.0-6.tar.gz</package>
|
|
|
22 <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/caTools_1.16.tar.gz</package>
|
|
|
23 <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/Biostrings_2.30.1.tar.gz</package>
|
|
|
24 <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/GenomicRanges_1.14.4.tar.gz</package>
|
|
|
25 <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/RColorBrewer_1.0-5.tar.gz</package>
|
|
|
26 <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/amap_0.8-7.tar.gz</package>
|
|
|
27 <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/edgeR_3.4.2.tar.gz</package>
|
|
|
28 <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/gplots_2.12.1.tar.gz</package>
|
|
|
29 <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/zlibbioc_1.8.0.tar.gz</package>
|
|
|
30 <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/Rsamtools_1.14.2.tar.gz</package>
|
|
2
|
31 <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/getopt_1.20.0.tar.gz</package>
|
|
3
|
32 <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/GenomeInfoDb_1.4.0.tar.gz</package>
|
|
|
33 <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/GenomicAlignments_1.4.1.tar.gz</package>
|
|
|
34 <package>http://cran.r-project.org/src/contrib/locfit_1.5-9.1.tar.gz</package>
|
|
|
35 <package>http://bioconductor.org/packages/release/bioc/src/contrib/BiocParallel_1.2.2.tar.gz</package>
|
|
|
36 <package>http://bioconductor.org/packages/release/bioc/src/contrib/ShortRead_1.26.0.tar.gz</package>
|
|
|
37 <package>http://bioconductor.org/packages/release/bioc/src/contrib/systemPipeR_1.2.1.tar.gz</package>
|
|
|
38 <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/DiffBind_1.14.4.tar.gz</package>
|
|
0
|
39 </action>
|
|
|
40 </actions>
|
|
|
41 </install>
|
|
|
42 <readme>
|
|
|
43 Differential Binding Analysis of ChIP-Seq peak data
|
|
|
44 http://www.bioconductor.org/packages/release/bioc/html/DiffBind.html
|
|
|
45 </readme>
|
|
|
46 </package>
|
|
|
47 </tool_dependency>
|
