Mercurial > repos > pavanvidem > diffbind
view tool_dependencies.xml @ 4:9e93f1274d6f draft
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author | pavanvidem |
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date | Tue, 26 May 2015 08:15:43 -0400 |
parents | 2c55a7e105bd |
children | 5057cf5e1832 |
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<?xml version="1.0"?> <tool_dependency> <package name="R" version="3.1.0"> <repository changeset_revision="cfa09c247b6e" name="package_r_3_1_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> <package name="deseq2" version="1.6.1"> <repository changeset_revision="5beee6b62be7" name="package_deseq2_1_6_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> <package name="diffbind" version="1.14.4"> <install version="1.0"> <actions> <action type="setup_r_environment"> <repository changeset_revision="cfa09c247b6e" name="package_r_3_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> <package name="R" version="3.1.0" /> </repository> <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/limma_3.18.9.tar.gz</package> <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/Biostrings_2.30.1.tar.gz</package> <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/amap_0.8-7.tar.gz</package> <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/edgeR_3.4.2.tar.gz</package> <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/zlibbioc_1.8.0.tar.gz</package> <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/Rsamtools_1.14.2.tar.gz</package> <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/GenomicAlignments_1.4.1.tar.gz</package> <package>http://bioconductor.org/packages/release/bioc/src/contrib/ShortRead_1.26.0.tar.gz</package> <package>http://bioconductor.org/packages/release/bioc/src/contrib/systemPipeR_1.2.1.tar.gz</package> <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/DiffBind_1.14.4.tar.gz</package> </action> </actions> </install> <readme> Differential Binding Analysis of ChIP-Seq peak data http://www.bioconductor.org/packages/release/bioc/html/DiffBind.html </readme> </package> </tool_dependency>