view tool_dependencies.xml @ 5:5057cf5e1832 draft

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<?xml version="1.0"?>
<tool_dependency>
    <package name="deseq2" version="1.6.1">
        <repository changeset_revision="5beee6b62be7" name="package_deseq2_1_6_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="diffbind" version="1.14.4">
        <install version="1.0">
            <actions>
                <action type="setup_r_environment">
                        <repository changeset_revision="5beee6b62be7" name="package_deseq2_1_6_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                            <package name="deseq2" version="1.6.1" />
                        </repository>
                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/limma_3.18.9.tar.gz</package>
                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/Biostrings_2.30.1.tar.gz</package>
                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/amap_0.8-7.tar.gz</package>
                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/edgeR_3.4.2.tar.gz</package>
                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/zlibbioc_1.8.0.tar.gz</package>
                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/Rsamtools_1.14.2.tar.gz</package>
                        <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/GenomicAlignments_1.4.1.tar.gz</package>
                        <package>http://bioconductor.org/packages/release/bioc/src/contrib/ShortRead_1.26.0.tar.gz</package>
                        <package>http://bioconductor.org/packages/release/bioc/src/contrib/systemPipeR_1.2.1.tar.gz</package>
                        <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/DiffBind_1.14.4.tar.gz</package>
                </action>
            </actions>
        </install>
        <readme>
        Differential Binding Analysis of ChIP-Seq peak data
        http://www.bioconductor.org/packages/release/bioc/html/DiffBind.html
        </readme>
    </package>
</tool_dependency>