Mercurial > repos > pavanvidem > diffbind

changeset 3:2c55a7e105bd draft

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Uploaded
author pavanvidem
date Tue, 26 May 2015 06:19:12 -0400
parents 68287eaad1d8
children 9e93f1274d6f
files tool_dependencies.xml
diffstat 1 files changed, 7 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Fri May 22 09:31:52 2015 -0400
+++ b/tool_dependencies.xml	Tue May 26 06:19:12 2015 -0400
@@ -13,7 +13,6 @@
                     <repository changeset_revision="cfa09c247b6e" name="package_r_3_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                         <package name="R" version="3.1.0" />
                     </repository>
-                        <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/DiffBind_1.14.4.tar.gz</package>
                         <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/IRanges_1.20.6.tar.gz</package>
                         <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/XVector_0.2.0.tar.gz</package>
                         <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/limma_3.18.9.tar.gz</package>
@@ -29,8 +28,14 @@
                         <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/gplots_2.12.1.tar.gz</package>
                         <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/zlibbioc_1.8.0.tar.gz</package>
                         <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/Rsamtools_1.14.2.tar.gz</package>
-                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/DiffBind_1.8.3.tar.gz</package>
                         <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/getopt_1.20.0.tar.gz</package>
+                        <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/GenomeInfoDb_1.4.0.tar.gz</package>
+                        <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/GenomicAlignments_1.4.1.tar.gz</package>
+                        <package>http://cran.r-project.org/src/contrib/locfit_1.5-9.1.tar.gz</package>
+                        <package>http://bioconductor.org/packages/release/bioc/src/contrib/BiocParallel_1.2.2.tar.gz</package>
+                        <package>http://bioconductor.org/packages/release/bioc/src/contrib/ShortRead_1.26.0.tar.gz</package>
+                        <package>http://bioconductor.org/packages/release/bioc/src/contrib/systemPipeR_1.2.1.tar.gz</package>
+                        <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/DiffBind_1.14.4.tar.gz</package>
                 </action>
             </actions>
         </install>