Mercurial > repos > pavanvidem > diffbind

changeset 1:1ff4ae929220 draft

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Uploaded
author pavanvidem
date Fri, 22 May 2015 09:17:32 -0400
parents 095c44c46032
children 68287eaad1d8
files diffbind.xml tool_dependencies.xml
diffstat 2 files changed, 5 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/diffbind.xml	Fri May 22 08:15:25 2015 -0400
+++ b/diffbind.xml	Fri May 22 09:17:32 2015 -0400
@@ -1,11 +1,11 @@
-<tool id="diffbind" name="DiffBind" version="2.0.2">
+<tool id="diffbind" name="DiffBind" version="2.0.3">
     <description> differential binding analysis of ChIP-Seq peak data</description>
     <requirements>
         <requirement type="binary">Rscript</requirement>
         <requirement type="R-module">DESeq2</requirement>
-        <requirement type="package" version="3.0.3">R</requirement>
+        <requirement type="package" version="3.1.0">R</requirement>
         <requirement type="package" version="1.2.10">deseq2</requirement>
-        <requirement type="package" version="1.8.3">diffbind</requirement>
+        <requirement type="package" version="1.14.4">diffbind</requirement>
     </requirements>
     <command>
 <![CDATA[
--- a/tool_dependencies.xml	Fri May 22 08:15:25 2015 -0400
+++ b/tool_dependencies.xml	Fri May 22 09:17:32 2015 -0400
@@ -7,7 +7,7 @@
         <repository changeset_revision="97afd1582a0e" name="package_deseq2_1_2_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="diffbind" version="1.14.4">
-        <install version="2.0">
+        <install version="1.0">
             <actions>
                 <action type="setup_r_environment">
                     <repository changeset_revision="cfa09c247b6e" name="package_r_3_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
@@ -30,7 +30,7 @@
                         <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/zlibbioc_1.8.0.tar.gz</package>
                         <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/Rsamtools_1.14.2.tar.gz</package>
                         <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/DiffBind_1.8.3.tar.gz</package>
-                        <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/getopt_1.20.0.tar.gz</package>
+                        <package>https://github.com/bg	ruening/download_store/raw/master/DiffBind-1_8_3/getopt_1.20.0.tar.gz</package>
                 </action>
             </actions>
         </install>