view fastq-mcf.xml @ 1:6dd8062546e8 default tip

fixed xmls

<tool id="fast-mcf" name="fastq mcf">
	<description>Fastq-mcf sequence filter, clipping and processor</description>
	<requirements>
		<requirement type="package" version="1.2.8">zlib</requirement>
		<requirement type="package" version="0.7.5a">bwa</requirement>
	</requirements>
	<command interpreter="python">
		fastq-mcf $options $input1 $input2 > $output 

	</command>

	<inputs>

		<param name="input1" type="data"  format="fasta" label="Source file 1"/>
		<param name="input2" type="data" format="fastq" label="Source file 2"/>

		<param name="options" type="select" optional="false" label="Quality type">
			<option value="" selected="true">None</option>
			<option value="-h">Help</option>
		</param>
	</inputs>

	<outputs>
    		<data format="txt" name="output"/>
	</outputs>

  <help>
This tool computes GC content from a FASTA file.
  </help>

</tool>