Mercurial > repos > nilesh > eautils
comparison fastq-mcf.xml @ 1:6dd8062546e8 default tip
fixed xmls
author | nilesh |
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date | Mon, 15 Jul 2013 21:50:45 -0500 |
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0:ae2ef1b65c47 | 1:6dd8062546e8 |
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1 <tool id="fast-mcf" name="fastq mcf"> | |
2 <description>Fastq-mcf sequence filter, clipping and processor</description> | |
3 <requirements> | |
4 <requirement type="package" version="1.2.8">zlib</requirement> | |
5 <requirement type="package" version="0.7.5a">bwa</requirement> | |
6 </requirements> | |
7 <command interpreter="python"> | |
8 fastq-mcf $options $input1 $input2 > $output | |
9 | |
10 </command> | |
11 | |
12 <inputs> | |
13 | |
14 <param name="input1" type="data" format="fasta" label="Source file 1"/> | |
15 <param name="input2" type="data" format="fastq" label="Source file 2"/> | |
16 | |
17 <param name="options" type="select" optional="false" label="Quality type"> | |
18 <option value="" selected="true">None</option> | |
19 <option value="-h">Help</option> | |
20 </param> | |
21 </inputs> | |
22 | |
23 <outputs> | |
24 <data format="txt" name="output"/> | |
25 </outputs> | |
26 | |
27 <help> | |
28 This tool computes GC content from a FASTA file. | |
29 </help> | |
30 | |
31 </tool> |