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1 <tool id="fast-mcf" name="fastq mcf">
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2 <description>Fastq-mcf sequence filter, clipping and processor</description>
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3 <requirements>
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4 <requirement type="package" version="1.2.8">zlib</requirement>
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5 <requirement type="package" version="0.7.5a">bwa</requirement>
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6 </requirements>
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7 <command interpreter="python">
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8 fastq-mcf $options $input1 $input2 > $output
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9
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10 </command>
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11
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12 <inputs>
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13
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14 <param name="input1" type="data" format="fasta" label="Source file 1"/>
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15 <param name="input2" type="data" format="fastq" label="Source file 2"/>
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16
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17 <param name="options" type="select" optional="false" label="Quality type">
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18 <option value="" selected="true">None</option>
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19 <option value="-h">Help</option>
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20 </param>
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21 </inputs>
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22
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23 <outputs>
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24 <data format="txt" name="output"/>
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25 </outputs>
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26
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27 <help>
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28 This tool computes GC content from a FASTA file.
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29 </help>
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30
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31 </tool>
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