Mercurial > repos > nilesh > eautils
changeset 1:6dd8062546e8 default tip
fixed xmls
| author | nilesh |
|---|---|
| date | Mon, 15 Jul 2013 21:50:45 -0500 |
| parents | ae2ef1b65c47 |
| children | |
| files | fastq-join.xml fastq-mcf.xml fastq-multx.xml |
| diffstat | 3 files changed, 86 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/fastq-join.xml Mon Jul 15 21:50:45 2013 -0500 @@ -0,0 +1,29 @@ +<tool id="fast-join" name="fastq join"> + <description>Fastq-join: merge overlapping parked end reads</description> + <requirements> + <requirement type="package" version="1.2.8">zlib</requirement> + <requirement type="package" version="0.7.5a">bwa</requirement> + </requirements> + <command interpreter="python"> + fastq-join $input1 $input2 -o $output1 -o $output2 -o $output3 + + </command> + + <inputs> + + <param name="input1" type="data" format="fastq" label="Source file 1"/> + <param name="input2" type="data" format="fastq" label="Source file 2"/> + </inputs> + + <outputs> + <data format="txt" name="output1" label="output file un1"/> + <data format="txt" name="output2" label="output file un2"/> + <data format="txt" name="output3" label="output file join"/> + + </outputs> + + <help> +This tool computes GC content from a FASTA file. + </help> + +</tool>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/fastq-mcf.xml Mon Jul 15 21:50:45 2013 -0500 @@ -0,0 +1,31 @@ +<tool id="fast-mcf" name="fastq mcf"> + <description>Fastq-mcf sequence filter, clipping and processor</description> + <requirements> + <requirement type="package" version="1.2.8">zlib</requirement> + <requirement type="package" version="0.7.5a">bwa</requirement> + </requirements> + <command interpreter="python"> + fastq-mcf $options $input1 $input2 > $output + + </command> + + <inputs> + + <param name="input1" type="data" format="fasta" label="Source file 1"/> + <param name="input2" type="data" format="fastq" label="Source file 2"/> + + <param name="options" type="select" optional="false" label="Quality type"> + <option value="" selected="true">None</option> + <option value="-h">Help</option> + </param> + </inputs> + + <outputs> + <data format="txt" name="output"/> + </outputs> + + <help> +This tool computes GC content from a FASTA file. + </help> + +</tool>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/fastq-multx.xml Mon Jul 15 21:50:45 2013 -0500 @@ -0,0 +1,26 @@ +<tool id="fastq-multx" name="fastq multx"> + <description>Fastq-mutlx</description> + <requirements> + <requirement type="package" version="1.2.8">zlib</requirement> + <requirement type="package" version="0.7.5a">bwa</requirement> + + </requirements> + <command interpreter="python"> + fastq-multx $input1 $input2 -o $output1 + + </command> + + <inputs> + <param name="input1" type="data" format="fil" label="Source file 1"/> + <param name="input2" type="data" format="fastq" label="Source file 2"/> + </inputs> + + <outputs> + <data format="fastq" name="output1" label="output file" /> + </outputs> + + <help> +This tool computes GC content from a FASTA file. + </help> + +</tool>