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changeset 0:ae2ef1b65c47

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Uploaded
author nilesh
date Mon, 15 Jul 2013 18:13:24 -0400
parents
children 6dd8062546e8
files tool_dependencies.xml
diffstat 1 files changed, 25 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon Jul 15 18:13:24 2013 -0400
@@ -0,0 +1,25 @@
+<?xml version="1.0"?>
+<tool_dependency>
+	<package name="zlib" version="1.2.8">
+        <repository toolshed="http://testtoolshed.g2.bx.psu.edu" name="zlib" owner="nilesh" changeset_revision="28f618926504" />
+    </package>
+    <package name="ea-utils" version="1.1.2">
+    	<install version="1.0">
+    		<actions>
+    			<action type="set_environment_for_install">
+                    <repository changeset_revision="28f618926504" name="zlib" owner="nilesh" toolshed="http://testtoolshed.g2.bx.psu.edu">
+                        <package name="zlib" version="1.2.8" />
+                   </repository>
+                </action>
+    			<action type="download_by_url">https://code.google.com/p/ea-utils/downloads/detail?name=ea-utils.1.1.2-537.tar.gz</action>
+    			<action type="shell_command">PREFIX=$INSTALL_DIR make install CFLAGS="-O3 -I. -L$ZLIB_PATH"</action>
+    			<action type="set_environment">
+    				<environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+    			</action>
+    		</actions>
+    	</install>
+    </package>
+    <set_environment version="1.0">
+        <environment_variable name="RNASEQCPATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable>
+    </set_environment>
+</tool_dependency>