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annotate mafft/test/sample.lins1 @ 18:e4d75f9efb90 draft

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planemo upload commit b'4303231da9e48b2719b4429a29b72421d24310f4\n'-dirty
author nick
date Thu, 02 Feb 2017 18:44:31 -0500
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18
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1 > 1== M63632 1 Lampetra japonica rhodopsin <>[BBRC174,1125-1132'91]
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2 -------------------------MNGTE--G-------------------DNFYVPFS
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3 NKTG--------------------------------LARSPYEYPQY-------------
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4 ---YLAEPW---------KYSA-----LAAYMFFLILVGFPVNFLTLFVTVQHKKLRTPL
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5 NYILLNLAMANLFMVLFG-FTVTMYTSMN-GYFV--FGPTMCSIEGFFATLGGEVALWSL
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6 VVLAIERYIVICKPMGNF-RFGNTHAIMGVAFTWIMALAC-AAPPLV-GWS-----RYIP
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7 EGMQCSCGPDYYTLNPNFNNESYVVYMFVVHFLVPFVIIFFCYGRLLCTVKEAAAAQQES
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8 A-----------------------------------------------------------
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9 ------------------------------------------------------------
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10 ----------------------STQKAEKEVTRMVVLMVIGFLVCWVPYASVAFYIFT-H
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11 QGS--DFGATFMTLPAFFAKSSALYNPVIYILMNKQFRNCMITTLCC------GKNPLGD
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12 DE-SG-ASTSK-TEVSSVS--TSPVSPA--------------------------------
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13 -----------------------------------------------------------
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14 > 2== U22180 1 rat opsin <rod>[J.Mol.Neurosci.5(3),207-209'94]
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15 -------------------------MNGTE--G-------------------PNFYVPFS
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16 NITG--------------------------------VVRSPFEQPQY-------------
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17 ---YLAEPW---------QFSM-----LAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPL
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18 NYILLNLAVADLFMVFGG-FTTTLYTSLH-GYFV--FGPTGCNLEGFFATLGGEIGLWSL
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19 VVLAIERYVVVCKPMSNF-RFGENHAIMGVAFTWVMALAC-AAPPLV-GWS-----RYIP
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20 EGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQES
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21 A-----------------------------------------------------------
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22 ------------------------------------------------------------
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23 ----------------------TTQKAEKEVTRMVIIMVIFFLICWLPYASVAMYIFT-H
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24 QGS--NFGPIFMTLPAFFAKTASIYNPIIYIMMNKQFRNCMLTSLCC------GKNPLGD
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25 DE-AS-ATASK-TETSQVA--PA-------------------------------------
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26 -----------------------------------------------------------
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27 > 3== M92038 1 chicken green sensitive cone opsin <retina>[PNAS89,5932-5936'9
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28 -------------------------MNGTE--G-------------------INFYVPMS
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29 NKTG--------------------------------VVRSPFEYPQY-------------
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30 ---YLAEPW---------KYRL-----VCCYIFFLISTGLPINLLTLLVTFKHKKLRQPL
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31 NYILVNLAVADLFMACFG-FTVTFYTAWN-GYFV--FGPVGCAVEGFFATLGGQVALWSL
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32 VVLAIERYIVVCKPMGNF-RFSATHAMMGIAFTWVMAFSC-AAPPLF-GWS-----RYMP
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33 EGMQCSCGPDYYTHNPDYHNESYVLYMFVIHFIIPVVVIFFSYGRLICKVREAAAQQQES
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34 A-----------------------------------------------------------
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35 ------------------------------------------------------------
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36 ----------------------TTQKAEKEVTRMVILMVLGFMLAWTPYAVVAFWIFT-N
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37 KGA--DFTATLMAVPAFFSKSSSLYNPIIYVLMNKQFRNCMITTICC------GKNPFGD
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38 EDVSSTVSQSK-TEVSSVS--SSQVSPA--------------------------------
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39 -----------------------------------------------------------
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40 > 4=p A45229 opsin, green-sensitive (clone GFgr-1) - goldfish
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41 -------------------------MNGTE--G-------------------KNFYVPMS
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42 NRTG--------------------------------LVRSPFEYPQY-------------
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43 ---YLAEPW---------QFKI-----LALYLFFLMSMGLPINGLTLVVTAQHKKLRQPL
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44 NFILVNLAVAGTIMVCFG-FTVTFYTAIN-GYFV--LGPTGCAVEGFMATLGGEVALWSL
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45 VVLAIERYIVVCKPMGSF-KFSSSHAFAGIAFTWVMALAC-AAPPLF-GWS-----RYIP
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46 EGMQCSCGPDYYTLNPDYNNESYVIYMFVCHFILPVAVIFFTYGRLVCTVKAAAAQQQDS
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47 A-----------------------------------------------------------
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48 ------------------------------------------------------------
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49 ----------------------STQKAEREVTKMVILMVFGFLIAWTPYATVAAWIFF-N
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50 KGA--DFSAKFMAIPAFFSKSSALYNPVIYVLLNKQFRNCMLTTIFC------GKNPLGD
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51 DE-SSTVSTSK-TEVSSVS--PA-------------------------------------
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52 -----------------------------------------------------------
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53 > 5=p B45229 opsin, green-sensitive (clone GFgr-2) - goldfish
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54 -------------------------MNGTE--G-------------------NNFYVPLS
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55 NRTG--------------------------------LVRSPFEYPQY-------------
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56 ---YLAEPW---------QFKL-----LAVYMFFLICLGLPINGLTLICTAQHKKLRQPL
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57 NFILVNLAVAGAIMVCFG-FTVTFYTAIN-GYFA--LGPTGCAVEGFMATLGGEVALWSL
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58 VVLAIERYIVVCKPMGSF-KFSSTHASAGIAFTWVMAMAC-AAPPLV-GWS-----RYIP
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59 EGIQCSCGPDYYTLNPEYNNESYVLYMFICHFILPVTIIFFTYGRLVCTVKAAAAQQQDS
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60 A-----------------------------------------------------------
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61 ------------------------------------------------------------
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62 ----------------------STQKAEREVTKMVILMVLGFLVAWTPYATVAAWIFF-N
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63 KGA--AFSAQFMAIPAFFSKTSALYNPVIYVLLNKQFRSCMLTTLFC------GKNPLGD
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64 EE-SSTVSTSK-TEVSSVS--PA-------------------------------------
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65 -----------------------------------------------------------
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66 > 6== L11864 1 Carassius auratus blue cone opsin <retina>[Biochemistry32,208-
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67 -------------------------MKQVPEFH-------------------EDFYIPIP
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68 LDIN------------------------------NLSAYSPFLVPQD-------------
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69 ---HLGNQG---------IFMA-----MSVFMFFIFIGGASINILTILCTIQFKKLRSHL
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70 NYILVNLSIANLFVAIFG-SPLSFYSFFN-RYFI--FGATACKIEGFLATLGGMVGLWSL
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71 AVVAFERWLVICKPLGNF-TFKTPHAIAGCILPWISALAA-SLPPLF-GWS-----RYIP
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72 EGLQCSCGPDWYTTNNKYNNESYVMFLFCFCFAVPFGTIVFCYGQLLITLKLAAKAQADS
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73 A-----------------------------------------------------------
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74 ------------------------------------------------------------
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75 ----------------------STQKAEREVTKMVVVMVLGFLVCWAPYASFSLWIVS-H
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76 RGE--EFDLRMATIPSCLSKASTVYNPVIYVLMNKQFRSCMM-KMVC------GKN-IEE
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77 DE-AS-TSSQV-TQVSSVA--PEK------------------------------------
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78 -----------------------------------------------------------
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79 > 7== M13299 1 human BCP <>[Science232(4747),193-202'86]
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80 -------------------------MRKMS--E-------------------EEFYL---
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81 --FK------------------------------NISSVGPWDGPQY-------------
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82 ---HIAPVW---------AFYL-----QAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPL
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83 NYILVNVSFGGFLLCIFS-VFPVFVASCN-GYFV--FGRHVCALEGFLGTVAGLVTGWSL
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84 AFLAFERYIVICKPFGNF-RFSSKHALTVVLATWTIGIGV-SIPPFF-GWS-----RFIP
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85 EGLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQES
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86 A-----------------------------------------------------------
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87 ------------------------------------------------------------
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88 ----------------------TTQKAEREVSRMVVVMVGSFCVCYVPYAAFAMYMVN-N
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89 RNH--GLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIM-KMVC------GKA-MTD
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90 ES-DT-CSSQK-TEVSTVS--STQVGPN--------------------------------
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91 -----------------------------------------------------------
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92 > 8=opsin, greensensitive human (fragment) S07060
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93 ------------------------------------------------------------
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94 ------------------------------------------------------------
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95 ------------------------------------------------------------
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96 ----------DLAETVIA-STISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSL
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97 AIISWERWLVVCKPFGNV-RFDAKLAIVGIAFSWIWAAVW-TAPPIF-GWS-----RYWP
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98 HGLKTSCGPDVFSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAIRAVAKQQKES
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99 E-----------------------------------------------------------
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100 ------------------------------------------------------------
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101 ----------------------STQKAEKEVTRMVVVMVLAFC-----------------
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102 ------------------------------------------------------------
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103 ------------------------------------------------------------
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104 -----------------------------------------------------------
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105 > 9== K03494 1 human GCP <>[Science232(4747),193-202'86]
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106 MAQQWS-LQRLAGRHPQDS-----YEDSTQ--S-------------------SIFTYTNS
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107 N-----------------------------------STRGPFEGPNY-------------
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108 ---HIAPRW---------VYHL-----TSVWMIFVVIASVFTNGLVLAATMKFKKLRHPL
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109 NWILVNLAVADLAETVIA-STISVVNQVY-GYFV--LGHPMCVLEGYTVSLCGITGLWSL
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110 AIISWERWMVVCKPFGNV-RFDAKLAIVGIAFSWIWAAVW-TAPPIF-GWS-----RYWP
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111 HGLKTSCGPDVFSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAIRAVAKQQKES
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112 E-----------------------------------------------------------
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113 ------------------------------------------------------------
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114 ----------------------STQKAEKEVTRMVVVMVLAFCFCWGPYAFFACFAAA-N
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115 PGY--PFHPLMAALPAFFAKSATIYNPVIYVFMNRQFRNCIL-QLF-------GKK-VDD
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116 GS-EL-SSASK-TEVSSV----SSVSPA--------------------------------
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117 -----------------------------------------------------------
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118 > 10== Z68193 1 human Red Opsin <>[]
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119 MAQQWS-LQRLAGRHPQDS-----YEDSTQ--S-------------------SIFTYTNS
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120 N-----------------------------------STRGPFEGPNY-------------
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121 ---HIAPRW---------VYHL-----TSVWMIFVVTASVFTNGLVLAATMKFKKLRHPL
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122 NWILVNLAVADLAETVIA-STISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSL
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123 AIISWERWLVVCKPFGNV-RFDAKLAIVGIAFSWIWSAVW-TAPPIF-GWS-----RYWP
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124 HGLKTSCGPDVFSGSSYPGVQSYMIVLMVTCCIIPLAIIMLCYLQVWLAIRAVAKQQKES
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125 E-----------------------------------------------------------
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126 ------------------------------------------------------------
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127 ----------------------STQKAEKEVTRMVVVMIFAYCVCWGPYTFFACFAAA-N
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128 PGY--AFHPLMAALPAYFAKSATIYNPVIYVFMNRQFRNCIL-QLF-------GKK-VDD
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129 GS-EL-SSASK-TEVSSV----SSVSPA--------------------------------
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130 -----------------------------------------------------------
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131 > 11== M92036 1 Gecko gecko P521 <retina>[PNAS89,6841-6845'92]
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132 MTEAWNVAVFAARRSRDD-------DDTTR--G-------------------SVFTYTNT
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133 N-----------------------------------NTRGPFEGPNY-------------
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134 ---HIAPRW---------VYNL-----VSFFMIIVVIASCFTNGLVLVATAKFKKLRHPL
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135 NWILVNLAFVDLVETLVA-STISVFNQIF-GYFI--LGHPLCVIEGYVVSSCGITGLWSL
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136 AIISWERWFVVCKPFGNI-KFDSKLAIIGIVFSWVWAWGW-SAPPIF-GWS-----RYWP
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137 HGLKTSCGPDVFSGSVELGCQSFMLTLMITCCFLPLFIIIVCYLQVWMAIRAVAAQQKES
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138 E-----------------------------------------------------------
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139 ------------------------------------------------------------
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140 ----------------------STQKAEREVSRMVVVMIVAFCICWGPYASFVSFAAA-N
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141 PGY--AFHPLAAALPAYFAKSATIYNPVIYVFMNRQFRNCIM-QLF-------GKK-VDD
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142 GS-EA-STTSR-TEVSSVS--NSSVAPA--------------------------------
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143 -----------------------------------------------------------
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144 > 12== M62903 1 chicken visual pigment <>[BBRC173,1212-1217'90]
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145 MA-AWE-AAFAARRRHEE-------EDTTR--D-------------------SVFTYTNS
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146 N-----------------------------------NTRGPFEGPNY-------------
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147 ---HIAPRW---------VYNL-----TSVWMIFVVAASVFTNGLVLVATWKFKKLRHPL
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148 NWILVNLAVADLGETVIA-STISVINQIS-GYFI--LGHPMCVVEGYTVSACGITALWSL
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149 AIISWERWFVVCKPFGNI-KFDGKLAVAGILFSWLWSCAW-TAPPIF-GWS-----RYWP
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150 HGLKTSCGPDVFSGSSDPGVQSYMVVLMVTCCFFPLAIIILCYLQVWLAIRAVAAQQKES
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151 E-----------------------------------------------------------
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152 ------------------------------------------------------------
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153 ----------------------STQKAEKEVSRMVVVMIVAYCFCWGPYTFFACFAAA-N
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154 PGY--AFHPLAAALPAYFAKSATIYNPIIYVFMNRQFRNCIL-QLF-------GKK-VDD
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155 GS-EV-ST-SR-TEVSSVS--NSSVSPA--------------------------------
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156 -----------------------------------------------------------
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157 > 13== S75720 1 chicken P-opsin <>[Science267(5203),1502-1506'95]
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158 -----------------------------M--S-------------------SNSSQAPP
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159 N-----------------------------------GTPGPFDGPQW-------------
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160 --PYQAPQS---------TYVG-----VAVLMGTVVACASVVNGLVIVVSICYKKLRSPL
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161 NYILVNLAVADLLVTLCG-SSVSLSNNIN-GFFV--FGRRMCELEGFMVSLTGIVGLWSL
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162 AILALERYVVVCKPLGDF-QFQRRHAVSGCAFTWGWALLW-SAPPLL-GWS-----SYVP
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163 EGLRTSCGPNWYTGGSN--NNSYILSLFVTCFVLPLSLILFSYTNLLLTLRAAAAQQKEA
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164 D-----------------------------------------------------------
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165 ------------------------------------------------------------
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166 ----------------------TTQRAEREVTRMVIVMVMAFLLCWLPYSTFALVVAT-H
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167 KGI--IIQPVLASLPSYFSKTATVYNPIIYVFMNKQFQSCLL-EMLCCG--YQPQR-TGK
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168 AS-PG-TPGPH-ADVTAAG-LRNKVMPAHPV-----------------------------
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169 -----------------------------------------------------------
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170 > 14== M17718 1 D.melanogaster Rh3 <>[J.Neurosci.7,1550-1557'87]
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171 ----------------MESGNVSSSLFGNV--S-------------------TALR----
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172 ---P--------------------------------EARLSA---E---TRLLGWNVPPE
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173 ELRHIPEHWLTYPEPPESMNYL-----LGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPS
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174 NILVINLAFCDFMMM-VK-TPIFIYNSFH-QGYA--LGHLGCQIFGIIGSYTGIAAGATN
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175 AFIAYDRFNVITRPMEG--KMTHGKAIAMIIFIYMYATPW-VVACYTETWG-----RFVP
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176 EGYLTSCTFDYLTDN--FDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKALRDQ
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177 AKKM------------------NVESLRS-------------------------------
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178 ------------------------------------------------------------
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179 ------------------NVDKNKETAEIRIAKAAITICFLFFCSWTPYGVMSLIGAF-G
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180 DKT--LLTPGATMIPACACKMVACIDPFVYAISHPRYRMELQ-KRCPWL--ALNEK-APE
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181 SS-AV-ASTST-TQEPQQT----TAA----------------------------------
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182 -----------------------------------------------------------
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183 > 15== X65879 1 Drosophila pseudoobscura Dpse\Rh3 <>[Genetics132(1),193-204'92
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184 ----------------MEYHNVSSVL-GNV--S-------------------SVLR----
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185 ---P--------------------------------DARLSA---E---SRLLGWNVPPD
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186 ELRHIPEHWLIYPEPPESMNYL-----LGTLYIFFTVISMIGNGLVMWVFSAAKSLRTPS
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187 NILVINLAFCDFMMM-IK-TPIFIYNSFH-QGYA--LGHLGCQIFGVIGSYTGIAAGATN
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188 AFIAYDRYNVITRPMEG--KMTHGKAIAMIIFIYLYATPW-VVACYTESWG-----RFVP
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189 EGYLTSCTFDYLTDN--FDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKALRDQ
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190 AKKM------------------NVDSLRS-------------------------------
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191 ------------------------------------------------------------
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192 ------------------NVDKSKEAAEIRIAKAAITICFLFFASWTPYGVMSLIGAF-G
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193 DKT--LLTPGATMIPACTCKMVACIDPFVYAISHPRYRMELQ-KRCPWL--AISEK-APE
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194 SR-AA-ISTST-TQEQQQT----TAA----------------------------------
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195 -----------------------------------------------------------
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196 > 16== M17730 1 D.melanogaster Rh4 opsin <>[J.Neurosci.7,1558-1566'87]
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197 ----------------------MEPLCNAS--E-------------------PPLR----
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198 ---P--------------------------------EAR-SSGNGD---LQFLGWNVPPD
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199 QIQYIPEHWLTQLEPPASMHYM-----LGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPS
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200 NMFVLNLAVFDLIMC-LK-APIF--NSFH-RGFAIYLGNTWCQIFASIGSYSGIGAGMTN
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201 AAIGYDRYNVITKPMNR--NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFWD-----RFVP
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202 EGYLTSCSFDYLSDN--FDTRLFVGTIFFFSFVCPTLMILYYYSQIVGHVFSHEKALREQ
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203 AKKM------------------NVESLRS-------------------------------
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204 ------------------------------------------------------------
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205 ------------------NVDKSKETAEIRIAKAAITICFLFFVSWTPYGVMSLIGAF-G
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206 DKS--LLTQGATMIPACTCKLVACIDPFVYAISHPRYRLELQ-KRCPWL--GVNEK-SGE
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207 IS-SA-QSTTT-QEQQQTT----AA-----------------------------------
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208 -----------------------------------------------------------
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209 > 17== X65880 1 Drosophila pseudoobscura Dpse\Rh4 <>[Genetics132(1),193-204'92
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210 ----------------------MDALCNAS--E-------------------PPLR----
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211 ---P--------------------------------EARMSSGSDE---LQFLGWNVPPD
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212 QIQYIPEHWLTQLEPPASMHYM-----LGVFYIFLFFASTLGNGMVIWIFSTSKSLRTPS
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213 NMFVLNLAVFDLIMC-LK-APIFIYNSFH-RGFA--LGNTWCQIFASIGSYSGIGAGMTN
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214 AAIGYDRYNVITKPMNR--NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFWD-----RFVP
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215 EGYLTSCSFDYLSDN--FDTRLFVGTIFLFSFVVPTLMILYYYSQIVGHVFNHEKALREQ
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216 AKKM------------------NVESLRS-------------------------------
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217 ------------------------------------------------------------
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218 ------------------NVDKSKETAEIRIAKAAITICFLFFVSWTPYGVMSLIGAF-G
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219 DKS--LLTPGATMIPACTCKLVACIEPFVYAISHPRYRMELQ-KRCPWL--GVNEK-SGE
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220 AS-SA-QSTTT-QEQTQQT----SAA----------------------------------
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221 -----------------------------------------------------------
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222 > 18== D50584 1 Hemigrapsus sanguineus opsin BcRh2 <compound eye>[J.Exp.Biol.1
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223 -------------------------MTNAT--G-------------------PQMAY---
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224 --YG--------------------------------AASMDFGYPE---GVSIVDFVRPE
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225 IKPYVHQHWYNYPPVNPMWHYL-----LGVIYLFLGTVSIFGNGLVIYLFNKSAALRTPA
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226 NILVVNLALSDLIMLTTN-VPFFTYNCFSGGVWM--FSPQYCEIYACLGAITGVCSIWLL
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227 CMISFDRYNIICNGFNGP-KLTTGKAVVFALISWVIAIGC-ALPPFF-GWG-----NYIL
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228 EGILDSCSYDYLTQD--FNTFSYNIFIFVFDYFLPAAIIVFSYVFIVKAIFAHEAAMRAQ
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229 AKKM------------------NVSTLRS-------------------------------
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230 ------------------------------------------------------------
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231 -------------------NEADAQRAEIRIAKTALVNVSLWFICWTPYALISLKGVM-G
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232 DTS--GITPLVSTLPALLAKSCSCYNPFVYAISHPKYRLAIT-QHLPWF--CVHET-ETK
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233 SN-DD-SQSNS-TVAQDKA-----------------------------------------
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234 -----------------------------------------------------------
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235 > 19== D50583 1 Hemigrapsus sanguineus opsin BcRh1 <compound eye>[J.Exp.Biol.1
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236 -------------------------MANVT--G-------------------PQMAF---
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237 --YG--------------------------------SGAATFGYPE---GMTVADFVPDR
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238 VKHMVLDHWYNYPPVNPMWHYL-----LGVVYLFLGVISIAGNGLVIYLYMKSQALKTPA
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239 NMLIVNLALSDLIMLTTN-FPPFCYNCFSGGRWM--FSGTYCEIYAALGAITGVCSIWTL
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240 CMISFDRYNIICNGFNGP-KLTQGKATFMCGLAWVISVGW-SLPPFF-GWG-----SYTL
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241 EGILDSCSYDYFTRD--MNTITYNICIFIFDFFLPASVIVFSYVFIVKAIFAHEAAMRAQ
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242 AKKM------------------NVTNLRS-------------------------------
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243 ------------------------------------------------------------
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244 -------------------NEAETQRAEIRIAKTALVNVSLWFICWTPYAAITIQGLL-G
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245 NAE--GITPLLTTLPALLAKSCSCYNPFVYAISHPKFRLAIT-QHLPWF--CVHEK-DPN
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246 DV-EE-NQSSN-TQTQEKS-----------------------------------------
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247 -----------------------------------------------------------
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248 > 20== K02320 1 D.melanogaster opsin <>[Cell40,851-858'85]
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249 ----------------MES---FAVAAAQL--G-------------------PHFA----
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250 --------------------------------------PLS--------NGSVVDKVTPD
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251 MAHLISPYWNQFPAMDPIWAKI-----LTAYMIMIGMISWCGNGVVIYIFATTKSLRTPA
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252 NLLVINLAISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSM
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253 CMISLDRYQVIVKGMAGR-PMTIPLALGKM---------------------------YVP
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254 EGNLTSCGIDYLERD--WNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQ
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255 AKKM------------------NVKSLRS-------------------------------
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256 ------------------------------------------------------------
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257 -------------------SEDAEKSAEGKLAKVALVTITLWFMAWTPYLVINCMGLF-K
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258 F-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALK-EKCPCC--VFGKV-DDG
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259 KS-SD-AQSQA-TASEAES----KA-----------------------------------
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260 -----------------------------------------------------------
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261 > 21== K02315 1 D.melanogaster ninaE <>[Cell40,839-850'85]
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262 ----------------MES---FAVAAAQL--G-------------------PHFA----
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263 --------------------------------------PLS--------NGSVVDKVTPD
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264 MAHLISPYWNQFPAMDPIWAKI-----LTAYMIMIGMISWCGNGVVIYIFATTKSLRTPA
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265 NLLVINLAISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSM
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266 CMISLDRYQVIVKGMAGR-PMTIPLALGKIAYIWFMSSIW-CLAPAF-GWS-----RYVP
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267 EGNLTSCGIDYLERD--WNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQ
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268 AKKM------------------NVKSLRS-------------------------------
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269 ------------------------------------------------------------
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270 -------------------SEDAEKSAEGKLAKVALVTITLWFMAWTPYLVINCMGLF-K
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271 F-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALK-EKCPCC--VFGKV-DDG
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272 KS-SD-AQSQA-TASEAES----KA-----------------------------------
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273 -----------------------------------------------------------
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274 > 22== X65877 1 Drosophila pseudoobscura Dpse\ninaE <>[Genetics132(1),193-204'
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275 ----------------MDS---FAAVATQL--G-------------------PQFA----
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276 --------------------------------------APS--------NGSVVDKVTPD
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277 MAHLISPYWDQFPAMDPIWAKI-----LTAYMIIIGMISWCGNGVVIYIFATTKSLRTPA
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278 NLLVINLAISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSM
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279 CMISLDRYQVIVKGMAGR-PMTIPLALGKIAYIWFMSTIWCCLAPVF-GWS-----RYVP
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280 EGNLTSCGIDYLERD--WNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQ
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281 AKKM------------------NVKSLRS-------------------------------
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282 ------------------------------------------------------------
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283 -------------------SEDADKSAEGKLAKVALVTISLWFMAWTPYLVINCMGLF-K
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284 F-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALK-EKCPCC--VFGKV-DDG
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285 KS-SE-AQSQA-TTSEAES----KA-----------------------------------
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286 -----------------------------------------------------------
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287 > 23== M12896 1 D.melanogaster Rh2 <>[Cell44,705-710'86]
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288 -----------MERSHLPE---TPFDLAHS--G-------------------PRFQ----
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289 --------------------------------------AQSSG------NGSVLDNVLPD
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290 MAHLVNPYWSRFAPMDPMMSKI-----LGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPA
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291 NLLVLNLAFSDFCMMASQ-SPVMIINFYY-ETWV--LGPLWCDIYAGCGSLFGCVSIWSM
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292 CMIAFDRYNVIVKGINGT-PMTIKTSIMKILFIWMMAVFW-TVMPLI-GWS-----AYVP
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293 EGNLTACSIDYMTRM--WNPRSYLITYSLFVYYTPLFLICYSYWFIIAAVAAHEKAMREQ
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294 AKKM------------------NVKSLRS-------------------------------
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295 ------------------------------------------------------------
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296 -------------------SEDCDKSAEGKLAKVALTTISLWFMAWTPYLVICYFGLF-K
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297 I-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIVLK-EKCPMC--VFGNT-DEP
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298 KP-DA-PASDTETTSEADS----KA-----------------------------------
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299 -----------------------------------------------------------
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300 > 24== X65878 1 Drosophila pseudoobscura Dpse\Rh2 <>[Genetics132(1),193-204'92
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301 -----------MERSLLPE---PPLAMALL--G-------------------PRFE----
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302 --------------------------------------AQTGG------NRSVLDNVLPD
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303 MAPLVNPHWSRFAPMDPTMSKI-----LGLFTLVILIISCCGNGVVVYIFGGTKSLRTPA
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304 NLLVLNLAFSDFCMMASQ-SPVMIINFYY-ETWV--LGPLWCDIYAACGSLFGCVSIWSM
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305 CMIAFDRYNVIVKGINGT-PMTIKTSIMKIAFIWMMAVFW-TIMPLI-GWS-----SYVP
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306 EGNLTACSIDYMTRQ--WNPRSYLITYSLFVYYTPLFMICYSYWFIIATVAAHEKAMRDQ
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307 AKKM------------------NVKSLRS-------------------------------
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308 ------------------------------------------------------------
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309 -------------------SEDCDKSAENKLAKVALTTISLWFMAWTPYLIICYFGLF-K
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310 I-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPNDRLVLK-EKCPMC--VCGTT-DEP
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311 KP-DA-PPSDTETTSEAES----KD-----------------------------------
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312 -----------------------------------------------------------
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313 > 25== U26026 1 Apis mellifera long-wavelength rhodopsin <>[]
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314 -------------------------MIAVS--G-------------------PSYE----
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315 --------------------------------------AFSYGGQARFNNQTVVDKVPPD
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316 MLHLIDANWYQYPPLNPMWHGI-----LGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPS
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317 NLFVINLAISNFLMMFCM-SPPMVINCYY-ETWV--LGPLFCQIYAMLGSLFGCGSIWTM
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318 TMIAFDRYNVIVKGLSGK-PLSINGALIRIIAIWLFSLGW-TIAPMF-GWN-----RYVP
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319 EGNMTACGTDYFNRG--LLSASYLVCYGIWVYFVPLFLIIYSYWFIIQAVAAHEKNMREQ
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320 AKKM------------------NVASLRS-------------------------------
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321 ------------------------------------------------------------
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322 -------------------SENQNTSAECKLAKVALMTISLWFMAWTPYLVINFSGIF-N
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323 L-V--KISPLFTIWGSLFAKANAVYNPIVYGISHPKYRAALF-AKFPSL--AC-AA-EPS
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324 SD-AV-STTSG-TTTVTDN----EKSNA--------------------------------
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325 -----------------------------------------------------------
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326 > 26== L03781 1 Limulus polyphemus opsin <>[PNAS90,6150-6154'93]
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327 ---------------------------MAN--Q-------------------LSYS----
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328 --------------------------------------SLGWPYQP---NASVVDTMPKE
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329 MLYMIHEHWYAFPPMNPLWYSI-----LGVAMIILGIICVLGNGMVIYLMMTTKSLRTPT
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330 NLLVVNLAFSDFCMMAFM-MPTMTSNCFA-ETWI--LGPFMCEVYGMAGSLFGCASIWSM
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331 VMITLDRYNVIVRGMAAA-PLTHKKATLLLLFVWIWSGGW-TILPFF-GWS-----RYVP
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332 EGNLTSCTVDYLTKD--WSSASYVVIYGLAVYFLPLITMIYCYFFIVHAVAEHEKQLREQ
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333 AKKM------------------NVASLRA-------------------------------
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334 ------------------------------------------------------------
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335 ------------------NADQQKQSAECRLAKVAMMTVGLWFMAWTPYLIISWAGVF-S
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336 SGT--RLTPLATIWGSVFAKANSCYNPIVYGISHPRYKAALY-QRFPSL--ACGSG-ESG
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337 SD-VK-SEASA-TTTMEEK----PKIPEA-------------------------------
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338 -----------------------------------------------------------
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339 > 27== X07797 1 Octopus dofleini rhodopsin <>[FEBS232(1),69-72'88]
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340 ---------------------------MVE--S-------------------TTLV----
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341 --------------------------------------NQTWWY-----NPTV-------
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342 ---DIHPHWAKFDPIPDAVYYS-----VGIFIGVVGIIGILGNGVVIYLFSKTKSLQTPA
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343 NMFIINLAMSDLSFSAINGFPLKTISAFM-KKWI--FGKVACQLYGLLGGIFGFMSINTM
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344 AMISIDRYNVIGRPMAASKKMSHRRAFLMIIFVWMWSIVW-SVGPVF-NWG-----AYVP
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345 EGILTSCSFDYLSTD--PSTRSFILCMYFCGFMLPIIIIAFCYFNIVMSVSNHEKEMAAM
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346 AKRL------------------NAKELRK-------------------------------
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347 ------------------------------------------------------------
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348 -------------------AQ-AGASAEMKLAKISMVIITQFMLSWSPYAIIALLAQF-G
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349 PAE--WVTPYAAELPVLFAKASAIHNPIVYSVSHPKFREAIQ-TTFPWLLTCCQFD-EKE
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350 CE-DA-NDAEE-EVVASER--GGESRDAAQMKEMMAMMQKMQAQQAAYQP---PPPPQGY
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351 PPQGYPPQGAYPPPQGYPPQGYPPQGYPPQGYPPQGAPPQVEAPQGAPPQGVDNQAYQA
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352 > 28== X70498 1 Todarodes pacificus rhodopsin <retina>[FEBS317(1-2),5-11'93]
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353 ----------------------------MG--R-------------------DLRD----
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354 --------------------------------------NETWWY-----NPSI-------
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355 ---VVHPHWREFDQVPDAVYYS-----LGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPA
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356 NMFIINLAFSDFTFSLVNGFPLMTISCFL-KKWI--FGFAACKVYGFIGGIFGFMSIMTM
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357 AMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLW-AIGPIF-GWG-----AYTL
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358 EGVLCNCSFDYISRD--STTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAM
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359 AKRL------------------NAKELRK-------------------------------
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360 ------------------------------------------------------------
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361 -------------------AQ-AGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQF-G
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362 PLE--WVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAIS-QTFPWVLTCCQFD-DKE
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363 TE-DD-KDAET-EIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGY
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364 PPQGYPPQGY--PPQGYPPQGYPP---PPQGAPPQGAPP------AAPPQGVDNQAYQA
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365 > 29== L21195 1 human serotonin 5-HT7 receptor protein <placenta and fetal bra
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366 ------------------------MMDVNS-SG----RPDLYGHLRSFLLPEVGRGLPDL
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367 SPDG------------GADPVAGSWAPHLLS---EVTASPA---PTW--DA------PPD
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368 NASGCGEQ----INYGRVEKVV-----IGSILTLITLLTIAGNCLVVISVCFVKKLRQPS
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369 NYLIVSLALADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTL
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370 CVISIDRYLGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLF-GWA-----QNVN
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371 DDKVCLISQDF----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF-
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372 -------------PGFPRVEPDSVIALNG-------------------------------
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373 ---------------------IVKLQKE------------------VEECAN--------
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374 ----------LSRLLKHERKNISIFKREQKAATTLGIIVGAFTVCWLPFFLLSTARPFIC
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375 GTSCSCIPLWVERTFLWLGYANSLINPFIYAFFNRDLRTTYR-SLLQCQ--YRNIN-RKL
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376 SA-AGMHEALKLAERPERPEFVLQNADYCRKK----------------------------
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377 --------------------------------------------------GHDS-----
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378 > 30== L15228 1 rat 5HT-7 serotonin receptor <>[JBC268,18200-18204'93]
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379 ------------------------------------------------------------
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380 -------------------------MPHLLSGFLEVTASPA---PTW--DA------PPD
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381 NVSGCGEQ----INYGRVEKVV-----IGSILTLITLLTIAGNCLVVISVSFVKKLRQPS
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382 NYLIVSLALADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTL
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383 CVISIDRYLGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLF-GWA-----QNVN
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384 DDKVCLISQDF----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF-
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385 -------------PGFPRVQPESVISLNG-------------------------------
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386 ---------------------VVKLQKE------------------VEECAN--------
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387 ----------LSRLLKHERKNISIFKREQKAATTLGIIVGAFTVCWLPFFLLSTARPFIC
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388 GTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRPTSR-SLLQCQ--YRNIN-RKL
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389 SA-AGMHEALKLAERPERSEFVLQNSDHCGKK----------------------------
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390 --------------------------------------------------GHDT-----
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391 > 31=p A47425 serotonin receptor 5HT-7 - rat
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392 ------------------------------------------------------------
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393 -------------------------MPHLLSGFLEVTASPA---PTW--DA------PPD
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394 NVSGCGEQ----INYGRVEKVV-----IGSILTLITLLTIAGNCLVVISVSFVKKLRQPS
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395 NYLIVSLALADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTL
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396 CVISIDRYLGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLF-GWA-----QNVN
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397 DDKVCLISQDF----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF-
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398 -------------PGFPRVQPESVISLNG-------------------------------
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399 ---------------------VVKLQKE------------------VEECAN--------
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400 ----------LSRLLKHERKNISIFKREQKAATTLGIIVGAFTVCWLPFFLLSTARPFIC
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401 GTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRTTYR-SLLQCQ--YRNIN-RKL
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402 SA-AGMHEALKLAERPERSEFVLQNSDHCGKK----------------------------
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403 --------------------------------------------------GHDT-----
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404 > 32== M83181 1 human serotonin receptor <>[JBC267(11),7553-7562'92]
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405 -------------------------MDVLS-PG---------------------------
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406 ------------------------------------QGNNT--------TSPPAPFETGG
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407 NTTGIS-------DVTVSYQVI-----TSLLLGTLIFCAVLGNACVVAAIALERSLQNVA
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408 NYLIGSLAVTDLMVSVLV-LPMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHL
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409 CAIALDRYWAITDPIDYVNKRTPRRAAALISLTWLIGFLI-SIPPML-GWRTPEDRSDPD
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410 ---ACTISKDH----------GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRKTVKK
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411 VEKTGADTRHGASPAPQPKK-----SVNG--ESGSRNWRLGVESKAGGALCANGAVRQGD
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412 DGAAL--EVIEVHRVGNSKEHLPLPSEAGPTPCAPAS------------------FERKN
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413 ERNA-------------EAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-C
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414 ESSC-HMPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFK-KIIKCK--FCRQ-----
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415 ------------------------------------------------------------
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416 -----------------------------------------------------------
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417 > 33=p A35181 serotonin receptor class 1A - rat
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418 -------------------------MDVFS-FG---------------------------
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419 ------------------------------------QGNNT--------TASQEPFGTGG
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420 NVTSIS-------DVTFSYQVI-----TSLLLGTLIFCAVLGNACVVAAIALERSLQNVA
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421 NYLIGSLAVTDLMVSVLV-LPMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHL
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422 CAIALDRYWAITDPIDYVNKRTPRRAAALISLTWLIGFLI-SIPPML-GWRTPEDRSDPD
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423 ---ACTISKDH----------GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRKTVRK
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424 VEKKGAGTSLGTSSAPPPKK-----SLNG--QPGSGDWRRCAENRAVGTPCTNGAVRQGD
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425 DEATL--EVIEVHRVGNSKEHLPLPSESGSNSYAPAC------------------LERKN
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426 ERNA-------------EAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-C
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427 ESSC-HMPALLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFK-KIIKCK--FCRR-----
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428 ------------------------------------------------------------
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429 -----------------------------------------------------------
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430 > 34== L06803 1 Lymnaea stagnalis serotonin receptor <>[PNAS90,11-15'93]
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431 ---------------MANFTFGDLALDVAR-MGGLASTPS---GLRS-----TGLTTPGL
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432 SPTGLVTSDFNDSYGLTGQFINGSHSSRSRD---NASANDT--------SATNM---TDD
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433 RYWSLT-------VYSHEHLVL-----TSVILGLFVLCCIIGNCFVIAAVMLERSLHNVA
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434 NYLILSLAVADLMVAVLV-MPLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHL
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435 VAIAMDRYWAVTS-IDYIRRRSARRILLMIMVVWIVALFI-SIPPLF-GWRDPNN--DPD
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436 KTGTCIISQDK----------GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQ
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437 MTKARLKTEETTLVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKN
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438 RAKKLPENANGVNSNSSSSERLKQIQIETAEAFANGCAEEASIAMLERQCNNGKKISSND
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439 TPYS-------------RTREKLELKRERKAARTLAIITGAFLICWLPFFIIALIGPF-V
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440 DPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQ-KILFGK--YRRGH-R--
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441 ------------------------------------------------------------
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442 -----------------------------------------------------------
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443 > 35=p A47174 serotonin receptor, 5HTlym receptor - great pond snail
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444 ---------------MANFTFGDLALDVAR-MGGLASTPS---GLRS-----TGLTTPGL
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445 SPTGLVTSDFNDSYGLTGQFINGSHSSRSRD---NASANDT--------SATNM---TDD
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446 RYWSLT-------VYSHEHLVL-----TSVILGLFVLCCIIGNCFVIAAVMLERSLHNVA
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447 NYLILSLAVADLMVAVLV-MPLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHL
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448 VAIAMDRYWAVTS-IDYIRRRSARRILLMIMVVWIVALFI-SIPPLF-GWRDPNN--DPD
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449 KTGTCIISQDK----------GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQ
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450 MTKARLKTEETTLVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKN
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451 RAKKLPENANGVNSNSSSSERLKQIQIETAEAFANGCAEEASIAMLERQCNNGKKISSND
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452 TPYS-------------RTREKLELKRERKAARTLAIITGAFLICWLPFFIIALIGPF-V
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453 DPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQ-KILFGK--YRRGH-R--
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454 ------------------------------------------------------------
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455 -----------------------------------------------------------
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456 > 36== X95604 1 Bombyx mori serotonin receptor <antennae>[InsectBiochem.Mol.Bi
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457 ----------------MEGAEGQEELDWEA-LY---------------------LRLP--
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458 -----------------------------LQ---NCSWNSTGWEPNW--NVTVV---PNT
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459 TWWQAS-------APFDTPAALVRAAAKAVVLGLLILATVVGNVFVIAAILLERHLRSAA
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460 NNLILSLAVADLLVACLV-MPLGAVYEVV-QRWT--LGPELCDMWTSGDVLCCTASILHL
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461 VAIALDRYWAVTN-IDYIHASTAKRVGMMIACVWTVSFFV-CIAQLL-GWKDPDWNQRVS
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462 EDLRCVVSQDV----------GYQIFATASSFYVPVLIILILYWRIYQTARKRIRR----
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463 --RRGATARGGVGPPPVPAG---------------------------------GALVAGG
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464 GSGGIAAAVVAV-----IGRPLPTISETTTTGFTNVSSNNTSPE--KQSCANGLEADPPT
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465 TGYGAVAAAYYPSLVRRKPKEAADSKRERKAAKTLAIITGAFVACWLPFFVLAILVPT-C
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466 DCE---VSPVLTSLSLWLGYFNSTLNPVIYTVFSPEFRHAFQ-RLLCGR--RVRRR-RA-
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467 ---------------PQ-------------------------------------------
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468 -----------------------------------------------------------