comparison mafft/test/sample.lins1 @ 18:e4d75f9efb90 draft

planemo upload commit b'4303231da9e48b2719b4429a29b72421d24310f4\n'-dirty
author nick
date Thu, 02 Feb 2017 18:44:31 -0500
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17:836fa4fe9494 18:e4d75f9efb90
1 > 1== M63632 1 Lampetra japonica rhodopsin <>[BBRC174,1125-1132'91]
2 -------------------------MNGTE--G-------------------DNFYVPFS
3 NKTG--------------------------------LARSPYEYPQY-------------
4 ---YLAEPW---------KYSA-----LAAYMFFLILVGFPVNFLTLFVTVQHKKLRTPL
5 NYILLNLAMANLFMVLFG-FTVTMYTSMN-GYFV--FGPTMCSIEGFFATLGGEVALWSL
6 VVLAIERYIVICKPMGNF-RFGNTHAIMGVAFTWIMALAC-AAPPLV-GWS-----RYIP
7 EGMQCSCGPDYYTLNPNFNNESYVVYMFVVHFLVPFVIIFFCYGRLLCTVKEAAAAQQES
8 A-----------------------------------------------------------
9 ------------------------------------------------------------
10 ----------------------STQKAEKEVTRMVVLMVIGFLVCWVPYASVAFYIFT-H
11 QGS--DFGATFMTLPAFFAKSSALYNPVIYILMNKQFRNCMITTLCC------GKNPLGD
12 DE-SG-ASTSK-TEVSSVS--TSPVSPA--------------------------------
13 -----------------------------------------------------------
14 > 2== U22180 1 rat opsin <rod>[J.Mol.Neurosci.5(3),207-209'94]
15 -------------------------MNGTE--G-------------------PNFYVPFS
16 NITG--------------------------------VVRSPFEQPQY-------------
17 ---YLAEPW---------QFSM-----LAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPL
18 NYILLNLAVADLFMVFGG-FTTTLYTSLH-GYFV--FGPTGCNLEGFFATLGGEIGLWSL
19 VVLAIERYVVVCKPMSNF-RFGENHAIMGVAFTWVMALAC-AAPPLV-GWS-----RYIP
20 EGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQES
21 A-----------------------------------------------------------
22 ------------------------------------------------------------
23 ----------------------TTQKAEKEVTRMVIIMVIFFLICWLPYASVAMYIFT-H
24 QGS--NFGPIFMTLPAFFAKTASIYNPIIYIMMNKQFRNCMLTSLCC------GKNPLGD
25 DE-AS-ATASK-TETSQVA--PA-------------------------------------
26 -----------------------------------------------------------
27 > 3== M92038 1 chicken green sensitive cone opsin <retina>[PNAS89,5932-5936'9
28 -------------------------MNGTE--G-------------------INFYVPMS
29 NKTG--------------------------------VVRSPFEYPQY-------------
30 ---YLAEPW---------KYRL-----VCCYIFFLISTGLPINLLTLLVTFKHKKLRQPL
31 NYILVNLAVADLFMACFG-FTVTFYTAWN-GYFV--FGPVGCAVEGFFATLGGQVALWSL
32 VVLAIERYIVVCKPMGNF-RFSATHAMMGIAFTWVMAFSC-AAPPLF-GWS-----RYMP
33 EGMQCSCGPDYYTHNPDYHNESYVLYMFVIHFIIPVVVIFFSYGRLICKVREAAAQQQES
34 A-----------------------------------------------------------
35 ------------------------------------------------------------
36 ----------------------TTQKAEKEVTRMVILMVLGFMLAWTPYAVVAFWIFT-N
37 KGA--DFTATLMAVPAFFSKSSSLYNPIIYVLMNKQFRNCMITTICC------GKNPFGD
38 EDVSSTVSQSK-TEVSSVS--SSQVSPA--------------------------------
39 -----------------------------------------------------------
40 > 4=p A45229 opsin, green-sensitive (clone GFgr-1) - goldfish
41 -------------------------MNGTE--G-------------------KNFYVPMS
42 NRTG--------------------------------LVRSPFEYPQY-------------
43 ---YLAEPW---------QFKI-----LALYLFFLMSMGLPINGLTLVVTAQHKKLRQPL
44 NFILVNLAVAGTIMVCFG-FTVTFYTAIN-GYFV--LGPTGCAVEGFMATLGGEVALWSL
45 VVLAIERYIVVCKPMGSF-KFSSSHAFAGIAFTWVMALAC-AAPPLF-GWS-----RYIP
46 EGMQCSCGPDYYTLNPDYNNESYVIYMFVCHFILPVAVIFFTYGRLVCTVKAAAAQQQDS
47 A-----------------------------------------------------------
48 ------------------------------------------------------------
49 ----------------------STQKAEREVTKMVILMVFGFLIAWTPYATVAAWIFF-N
50 KGA--DFSAKFMAIPAFFSKSSALYNPVIYVLLNKQFRNCMLTTIFC------GKNPLGD
51 DE-SSTVSTSK-TEVSSVS--PA-------------------------------------
52 -----------------------------------------------------------
53 > 5=p B45229 opsin, green-sensitive (clone GFgr-2) - goldfish
54 -------------------------MNGTE--G-------------------NNFYVPLS
55 NRTG--------------------------------LVRSPFEYPQY-------------
56 ---YLAEPW---------QFKL-----LAVYMFFLICLGLPINGLTLICTAQHKKLRQPL
57 NFILVNLAVAGAIMVCFG-FTVTFYTAIN-GYFA--LGPTGCAVEGFMATLGGEVALWSL
58 VVLAIERYIVVCKPMGSF-KFSSTHASAGIAFTWVMAMAC-AAPPLV-GWS-----RYIP
59 EGIQCSCGPDYYTLNPEYNNESYVLYMFICHFILPVTIIFFTYGRLVCTVKAAAAQQQDS
60 A-----------------------------------------------------------
61 ------------------------------------------------------------
62 ----------------------STQKAEREVTKMVILMVLGFLVAWTPYATVAAWIFF-N
63 KGA--AFSAQFMAIPAFFSKTSALYNPVIYVLLNKQFRSCMLTTLFC------GKNPLGD
64 EE-SSTVSTSK-TEVSSVS--PA-------------------------------------
65 -----------------------------------------------------------
66 > 6== L11864 1 Carassius auratus blue cone opsin <retina>[Biochemistry32,208-
67 -------------------------MKQVPEFH-------------------EDFYIPIP
68 LDIN------------------------------NLSAYSPFLVPQD-------------
69 ---HLGNQG---------IFMA-----MSVFMFFIFIGGASINILTILCTIQFKKLRSHL
70 NYILVNLSIANLFVAIFG-SPLSFYSFFN-RYFI--FGATACKIEGFLATLGGMVGLWSL
71 AVVAFERWLVICKPLGNF-TFKTPHAIAGCILPWISALAA-SLPPLF-GWS-----RYIP
72 EGLQCSCGPDWYTTNNKYNNESYVMFLFCFCFAVPFGTIVFCYGQLLITLKLAAKAQADS
73 A-----------------------------------------------------------
74 ------------------------------------------------------------
75 ----------------------STQKAEREVTKMVVVMVLGFLVCWAPYASFSLWIVS-H
76 RGE--EFDLRMATIPSCLSKASTVYNPVIYVLMNKQFRSCMM-KMVC------GKN-IEE
77 DE-AS-TSSQV-TQVSSVA--PEK------------------------------------
78 -----------------------------------------------------------
79 > 7== M13299 1 human BCP <>[Science232(4747),193-202'86]
80 -------------------------MRKMS--E-------------------EEFYL---
81 --FK------------------------------NISSVGPWDGPQY-------------
82 ---HIAPVW---------AFYL-----QAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPL
83 NYILVNVSFGGFLLCIFS-VFPVFVASCN-GYFV--FGRHVCALEGFLGTVAGLVTGWSL
84 AFLAFERYIVICKPFGNF-RFSSKHALTVVLATWTIGIGV-SIPPFF-GWS-----RFIP
85 EGLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQES
86 A-----------------------------------------------------------
87 ------------------------------------------------------------
88 ----------------------TTQKAEREVSRMVVVMVGSFCVCYVPYAAFAMYMVN-N
89 RNH--GLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIM-KMVC------GKA-MTD
90 ES-DT-CSSQK-TEVSTVS--STQVGPN--------------------------------
91 -----------------------------------------------------------
92 > 8=opsin, greensensitive human (fragment) S07060
93 ------------------------------------------------------------
94 ------------------------------------------------------------
95 ------------------------------------------------------------
96 ----------DLAETVIA-STISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSL
97 AIISWERWLVVCKPFGNV-RFDAKLAIVGIAFSWIWAAVW-TAPPIF-GWS-----RYWP
98 HGLKTSCGPDVFSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAIRAVAKQQKES
99 E-----------------------------------------------------------
100 ------------------------------------------------------------
101 ----------------------STQKAEKEVTRMVVVMVLAFC-----------------
102 ------------------------------------------------------------
103 ------------------------------------------------------------
104 -----------------------------------------------------------
105 > 9== K03494 1 human GCP <>[Science232(4747),193-202'86]
106 MAQQWS-LQRLAGRHPQDS-----YEDSTQ--S-------------------SIFTYTNS
107 N-----------------------------------STRGPFEGPNY-------------
108 ---HIAPRW---------VYHL-----TSVWMIFVVIASVFTNGLVLAATMKFKKLRHPL
109 NWILVNLAVADLAETVIA-STISVVNQVY-GYFV--LGHPMCVLEGYTVSLCGITGLWSL
110 AIISWERWMVVCKPFGNV-RFDAKLAIVGIAFSWIWAAVW-TAPPIF-GWS-----RYWP
111 HGLKTSCGPDVFSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAIRAVAKQQKES
112 E-----------------------------------------------------------
113 ------------------------------------------------------------
114 ----------------------STQKAEKEVTRMVVVMVLAFCFCWGPYAFFACFAAA-N
115 PGY--PFHPLMAALPAFFAKSATIYNPVIYVFMNRQFRNCIL-QLF-------GKK-VDD
116 GS-EL-SSASK-TEVSSV----SSVSPA--------------------------------
117 -----------------------------------------------------------
118 > 10== Z68193 1 human Red Opsin <>[]
119 MAQQWS-LQRLAGRHPQDS-----YEDSTQ--S-------------------SIFTYTNS
120 N-----------------------------------STRGPFEGPNY-------------
121 ---HIAPRW---------VYHL-----TSVWMIFVVTASVFTNGLVLAATMKFKKLRHPL
122 NWILVNLAVADLAETVIA-STISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSL
123 AIISWERWLVVCKPFGNV-RFDAKLAIVGIAFSWIWSAVW-TAPPIF-GWS-----RYWP
124 HGLKTSCGPDVFSGSSYPGVQSYMIVLMVTCCIIPLAIIMLCYLQVWLAIRAVAKQQKES
125 E-----------------------------------------------------------
126 ------------------------------------------------------------
127 ----------------------STQKAEKEVTRMVVVMIFAYCVCWGPYTFFACFAAA-N
128 PGY--AFHPLMAALPAYFAKSATIYNPVIYVFMNRQFRNCIL-QLF-------GKK-VDD
129 GS-EL-SSASK-TEVSSV----SSVSPA--------------------------------
130 -----------------------------------------------------------
131 > 11== M92036 1 Gecko gecko P521 <retina>[PNAS89,6841-6845'92]
132 MTEAWNVAVFAARRSRDD-------DDTTR--G-------------------SVFTYTNT
133 N-----------------------------------NTRGPFEGPNY-------------
134 ---HIAPRW---------VYNL-----VSFFMIIVVIASCFTNGLVLVATAKFKKLRHPL
135 NWILVNLAFVDLVETLVA-STISVFNQIF-GYFI--LGHPLCVIEGYVVSSCGITGLWSL
136 AIISWERWFVVCKPFGNI-KFDSKLAIIGIVFSWVWAWGW-SAPPIF-GWS-----RYWP
137 HGLKTSCGPDVFSGSVELGCQSFMLTLMITCCFLPLFIIIVCYLQVWMAIRAVAAQQKES
138 E-----------------------------------------------------------
139 ------------------------------------------------------------
140 ----------------------STQKAEREVSRMVVVMIVAFCICWGPYASFVSFAAA-N
141 PGY--AFHPLAAALPAYFAKSATIYNPVIYVFMNRQFRNCIM-QLF-------GKK-VDD
142 GS-EA-STTSR-TEVSSVS--NSSVAPA--------------------------------
143 -----------------------------------------------------------
144 > 12== M62903 1 chicken visual pigment <>[BBRC173,1212-1217'90]
145 MA-AWE-AAFAARRRHEE-------EDTTR--D-------------------SVFTYTNS
146 N-----------------------------------NTRGPFEGPNY-------------
147 ---HIAPRW---------VYNL-----TSVWMIFVVAASVFTNGLVLVATWKFKKLRHPL
148 NWILVNLAVADLGETVIA-STISVINQIS-GYFI--LGHPMCVVEGYTVSACGITALWSL
149 AIISWERWFVVCKPFGNI-KFDGKLAVAGILFSWLWSCAW-TAPPIF-GWS-----RYWP
150 HGLKTSCGPDVFSGSSDPGVQSYMVVLMVTCCFFPLAIIILCYLQVWLAIRAVAAQQKES
151 E-----------------------------------------------------------
152 ------------------------------------------------------------
153 ----------------------STQKAEKEVSRMVVVMIVAYCFCWGPYTFFACFAAA-N
154 PGY--AFHPLAAALPAYFAKSATIYNPIIYVFMNRQFRNCIL-QLF-------GKK-VDD
155 GS-EV-ST-SR-TEVSSVS--NSSVSPA--------------------------------
156 -----------------------------------------------------------
157 > 13== S75720 1 chicken P-opsin <>[Science267(5203),1502-1506'95]
158 -----------------------------M--S-------------------SNSSQAPP
159 N-----------------------------------GTPGPFDGPQW-------------
160 --PYQAPQS---------TYVG-----VAVLMGTVVACASVVNGLVIVVSICYKKLRSPL
161 NYILVNLAVADLLVTLCG-SSVSLSNNIN-GFFV--FGRRMCELEGFMVSLTGIVGLWSL
162 AILALERYVVVCKPLGDF-QFQRRHAVSGCAFTWGWALLW-SAPPLL-GWS-----SYVP
163 EGLRTSCGPNWYTGGSN--NNSYILSLFVTCFVLPLSLILFSYTNLLLTLRAAAAQQKEA
164 D-----------------------------------------------------------
165 ------------------------------------------------------------
166 ----------------------TTQRAEREVTRMVIVMVMAFLLCWLPYSTFALVVAT-H
167 KGI--IIQPVLASLPSYFSKTATVYNPIIYVFMNKQFQSCLL-EMLCCG--YQPQR-TGK
168 AS-PG-TPGPH-ADVTAAG-LRNKVMPAHPV-----------------------------
169 -----------------------------------------------------------
170 > 14== M17718 1 D.melanogaster Rh3 <>[J.Neurosci.7,1550-1557'87]
171 ----------------MESGNVSSSLFGNV--S-------------------TALR----
172 ---P--------------------------------EARLSA---E---TRLLGWNVPPE
173 ELRHIPEHWLTYPEPPESMNYL-----LGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPS
174 NILVINLAFCDFMMM-VK-TPIFIYNSFH-QGYA--LGHLGCQIFGIIGSYTGIAAGATN
175 AFIAYDRFNVITRPMEG--KMTHGKAIAMIIFIYMYATPW-VVACYTETWG-----RFVP
176 EGYLTSCTFDYLTDN--FDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKALRDQ
177 AKKM------------------NVESLRS-------------------------------
178 ------------------------------------------------------------
179 ------------------NVDKNKETAEIRIAKAAITICFLFFCSWTPYGVMSLIGAF-G
180 DKT--LLTPGATMIPACACKMVACIDPFVYAISHPRYRMELQ-KRCPWL--ALNEK-APE
181 SS-AV-ASTST-TQEPQQT----TAA----------------------------------
182 -----------------------------------------------------------
183 > 15== X65879 1 Drosophila pseudoobscura Dpse\Rh3 <>[Genetics132(1),193-204'92
184 ----------------MEYHNVSSVL-GNV--S-------------------SVLR----
185 ---P--------------------------------DARLSA---E---SRLLGWNVPPD
186 ELRHIPEHWLIYPEPPESMNYL-----LGTLYIFFTVISMIGNGLVMWVFSAAKSLRTPS
187 NILVINLAFCDFMMM-IK-TPIFIYNSFH-QGYA--LGHLGCQIFGVIGSYTGIAAGATN
188 AFIAYDRYNVITRPMEG--KMTHGKAIAMIIFIYLYATPW-VVACYTESWG-----RFVP
189 EGYLTSCTFDYLTDN--FDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKALRDQ
190 AKKM------------------NVDSLRS-------------------------------
191 ------------------------------------------------------------
192 ------------------NVDKSKEAAEIRIAKAAITICFLFFASWTPYGVMSLIGAF-G
193 DKT--LLTPGATMIPACTCKMVACIDPFVYAISHPRYRMELQ-KRCPWL--AISEK-APE
194 SR-AA-ISTST-TQEQQQT----TAA----------------------------------
195 -----------------------------------------------------------
196 > 16== M17730 1 D.melanogaster Rh4 opsin <>[J.Neurosci.7,1558-1566'87]
197 ----------------------MEPLCNAS--E-------------------PPLR----
198 ---P--------------------------------EAR-SSGNGD---LQFLGWNVPPD
199 QIQYIPEHWLTQLEPPASMHYM-----LGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPS
200 NMFVLNLAVFDLIMC-LK-APIF--NSFH-RGFAIYLGNTWCQIFASIGSYSGIGAGMTN
201 AAIGYDRYNVITKPMNR--NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFWD-----RFVP
202 EGYLTSCSFDYLSDN--FDTRLFVGTIFFFSFVCPTLMILYYYSQIVGHVFSHEKALREQ
203 AKKM------------------NVESLRS-------------------------------
204 ------------------------------------------------------------
205 ------------------NVDKSKETAEIRIAKAAITICFLFFVSWTPYGVMSLIGAF-G
206 DKS--LLTQGATMIPACTCKLVACIDPFVYAISHPRYRLELQ-KRCPWL--GVNEK-SGE
207 IS-SA-QSTTT-QEQQQTT----AA-----------------------------------
208 -----------------------------------------------------------
209 > 17== X65880 1 Drosophila pseudoobscura Dpse\Rh4 <>[Genetics132(1),193-204'92
210 ----------------------MDALCNAS--E-------------------PPLR----
211 ---P--------------------------------EARMSSGSDE---LQFLGWNVPPD
212 QIQYIPEHWLTQLEPPASMHYM-----LGVFYIFLFFASTLGNGMVIWIFSTSKSLRTPS
213 NMFVLNLAVFDLIMC-LK-APIFIYNSFH-RGFA--LGNTWCQIFASIGSYSGIGAGMTN
214 AAIGYDRYNVITKPMNR--NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFWD-----RFVP
215 EGYLTSCSFDYLSDN--FDTRLFVGTIFLFSFVVPTLMILYYYSQIVGHVFNHEKALREQ
216 AKKM------------------NVESLRS-------------------------------
217 ------------------------------------------------------------
218 ------------------NVDKSKETAEIRIAKAAITICFLFFVSWTPYGVMSLIGAF-G
219 DKS--LLTPGATMIPACTCKLVACIEPFVYAISHPRYRMELQ-KRCPWL--GVNEK-SGE
220 AS-SA-QSTTT-QEQTQQT----SAA----------------------------------
221 -----------------------------------------------------------
222 > 18== D50584 1 Hemigrapsus sanguineus opsin BcRh2 <compound eye>[J.Exp.Biol.1
223 -------------------------MTNAT--G-------------------PQMAY---
224 --YG--------------------------------AASMDFGYPE---GVSIVDFVRPE
225 IKPYVHQHWYNYPPVNPMWHYL-----LGVIYLFLGTVSIFGNGLVIYLFNKSAALRTPA
226 NILVVNLALSDLIMLTTN-VPFFTYNCFSGGVWM--FSPQYCEIYACLGAITGVCSIWLL
227 CMISFDRYNIICNGFNGP-KLTTGKAVVFALISWVIAIGC-ALPPFF-GWG-----NYIL
228 EGILDSCSYDYLTQD--FNTFSYNIFIFVFDYFLPAAIIVFSYVFIVKAIFAHEAAMRAQ
229 AKKM------------------NVSTLRS-------------------------------
230 ------------------------------------------------------------
231 -------------------NEADAQRAEIRIAKTALVNVSLWFICWTPYALISLKGVM-G
232 DTS--GITPLVSTLPALLAKSCSCYNPFVYAISHPKYRLAIT-QHLPWF--CVHET-ETK
233 SN-DD-SQSNS-TVAQDKA-----------------------------------------
234 -----------------------------------------------------------
235 > 19== D50583 1 Hemigrapsus sanguineus opsin BcRh1 <compound eye>[J.Exp.Biol.1
236 -------------------------MANVT--G-------------------PQMAF---
237 --YG--------------------------------SGAATFGYPE---GMTVADFVPDR
238 VKHMVLDHWYNYPPVNPMWHYL-----LGVVYLFLGVISIAGNGLVIYLYMKSQALKTPA
239 NMLIVNLALSDLIMLTTN-FPPFCYNCFSGGRWM--FSGTYCEIYAALGAITGVCSIWTL
240 CMISFDRYNIICNGFNGP-KLTQGKATFMCGLAWVISVGW-SLPPFF-GWG-----SYTL
241 EGILDSCSYDYFTRD--MNTITYNICIFIFDFFLPASVIVFSYVFIVKAIFAHEAAMRAQ
242 AKKM------------------NVTNLRS-------------------------------
243 ------------------------------------------------------------
244 -------------------NEAETQRAEIRIAKTALVNVSLWFICWTPYAAITIQGLL-G
245 NAE--GITPLLTTLPALLAKSCSCYNPFVYAISHPKFRLAIT-QHLPWF--CVHEK-DPN
246 DV-EE-NQSSN-TQTQEKS-----------------------------------------
247 -----------------------------------------------------------
248 > 20== K02320 1 D.melanogaster opsin <>[Cell40,851-858'85]
249 ----------------MES---FAVAAAQL--G-------------------PHFA----
250 --------------------------------------PLS--------NGSVVDKVTPD
251 MAHLISPYWNQFPAMDPIWAKI-----LTAYMIMIGMISWCGNGVVIYIFATTKSLRTPA
252 NLLVINLAISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSM
253 CMISLDRYQVIVKGMAGR-PMTIPLALGKM---------------------------YVP
254 EGNLTSCGIDYLERD--WNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQ
255 AKKM------------------NVKSLRS-------------------------------
256 ------------------------------------------------------------
257 -------------------SEDAEKSAEGKLAKVALVTITLWFMAWTPYLVINCMGLF-K
258 F-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALK-EKCPCC--VFGKV-DDG
259 KS-SD-AQSQA-TASEAES----KA-----------------------------------
260 -----------------------------------------------------------
261 > 21== K02315 1 D.melanogaster ninaE <>[Cell40,839-850'85]
262 ----------------MES---FAVAAAQL--G-------------------PHFA----
263 --------------------------------------PLS--------NGSVVDKVTPD
264 MAHLISPYWNQFPAMDPIWAKI-----LTAYMIMIGMISWCGNGVVIYIFATTKSLRTPA
265 NLLVINLAISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSM
266 CMISLDRYQVIVKGMAGR-PMTIPLALGKIAYIWFMSSIW-CLAPAF-GWS-----RYVP
267 EGNLTSCGIDYLERD--WNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQ
268 AKKM------------------NVKSLRS-------------------------------
269 ------------------------------------------------------------
270 -------------------SEDAEKSAEGKLAKVALVTITLWFMAWTPYLVINCMGLF-K
271 F-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALK-EKCPCC--VFGKV-DDG
272 KS-SD-AQSQA-TASEAES----KA-----------------------------------
273 -----------------------------------------------------------
274 > 22== X65877 1 Drosophila pseudoobscura Dpse\ninaE <>[Genetics132(1),193-204'
275 ----------------MDS---FAAVATQL--G-------------------PQFA----
276 --------------------------------------APS--------NGSVVDKVTPD
277 MAHLISPYWDQFPAMDPIWAKI-----LTAYMIIIGMISWCGNGVVIYIFATTKSLRTPA
278 NLLVINLAISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSM
279 CMISLDRYQVIVKGMAGR-PMTIPLALGKIAYIWFMSTIWCCLAPVF-GWS-----RYVP
280 EGNLTSCGIDYLERD--WNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQ
281 AKKM------------------NVKSLRS-------------------------------
282 ------------------------------------------------------------
283 -------------------SEDADKSAEGKLAKVALVTISLWFMAWTPYLVINCMGLF-K
284 F-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALK-EKCPCC--VFGKV-DDG
285 KS-SE-AQSQA-TTSEAES----KA-----------------------------------
286 -----------------------------------------------------------
287 > 23== M12896 1 D.melanogaster Rh2 <>[Cell44,705-710'86]
288 -----------MERSHLPE---TPFDLAHS--G-------------------PRFQ----
289 --------------------------------------AQSSG------NGSVLDNVLPD
290 MAHLVNPYWSRFAPMDPMMSKI-----LGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPA
291 NLLVLNLAFSDFCMMASQ-SPVMIINFYY-ETWV--LGPLWCDIYAGCGSLFGCVSIWSM
292 CMIAFDRYNVIVKGINGT-PMTIKTSIMKILFIWMMAVFW-TVMPLI-GWS-----AYVP
293 EGNLTACSIDYMTRM--WNPRSYLITYSLFVYYTPLFLICYSYWFIIAAVAAHEKAMREQ
294 AKKM------------------NVKSLRS-------------------------------
295 ------------------------------------------------------------
296 -------------------SEDCDKSAEGKLAKVALTTISLWFMAWTPYLVICYFGLF-K
297 I-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIVLK-EKCPMC--VFGNT-DEP
298 KP-DA-PASDTETTSEADS----KA-----------------------------------
299 -----------------------------------------------------------
300 > 24== X65878 1 Drosophila pseudoobscura Dpse\Rh2 <>[Genetics132(1),193-204'92
301 -----------MERSLLPE---PPLAMALL--G-------------------PRFE----
302 --------------------------------------AQTGG------NRSVLDNVLPD
303 MAPLVNPHWSRFAPMDPTMSKI-----LGLFTLVILIISCCGNGVVVYIFGGTKSLRTPA
304 NLLVLNLAFSDFCMMASQ-SPVMIINFYY-ETWV--LGPLWCDIYAACGSLFGCVSIWSM
305 CMIAFDRYNVIVKGINGT-PMTIKTSIMKIAFIWMMAVFW-TIMPLI-GWS-----SYVP
306 EGNLTACSIDYMTRQ--WNPRSYLITYSLFVYYTPLFMICYSYWFIIATVAAHEKAMRDQ
307 AKKM------------------NVKSLRS-------------------------------
308 ------------------------------------------------------------
309 -------------------SEDCDKSAENKLAKVALTTISLWFMAWTPYLIICYFGLF-K
310 I-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPNDRLVLK-EKCPMC--VCGTT-DEP
311 KP-DA-PPSDTETTSEAES----KD-----------------------------------
312 -----------------------------------------------------------
313 > 25== U26026 1 Apis mellifera long-wavelength rhodopsin <>[]
314 -------------------------MIAVS--G-------------------PSYE----
315 --------------------------------------AFSYGGQARFNNQTVVDKVPPD
316 MLHLIDANWYQYPPLNPMWHGI-----LGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPS
317 NLFVINLAISNFLMMFCM-SPPMVINCYY-ETWV--LGPLFCQIYAMLGSLFGCGSIWTM
318 TMIAFDRYNVIVKGLSGK-PLSINGALIRIIAIWLFSLGW-TIAPMF-GWN-----RYVP
319 EGNMTACGTDYFNRG--LLSASYLVCYGIWVYFVPLFLIIYSYWFIIQAVAAHEKNMREQ
320 AKKM------------------NVASLRS-------------------------------
321 ------------------------------------------------------------
322 -------------------SENQNTSAECKLAKVALMTISLWFMAWTPYLVINFSGIF-N
323 L-V--KISPLFTIWGSLFAKANAVYNPIVYGISHPKYRAALF-AKFPSL--AC-AA-EPS
324 SD-AV-STTSG-TTTVTDN----EKSNA--------------------------------
325 -----------------------------------------------------------
326 > 26== L03781 1 Limulus polyphemus opsin <>[PNAS90,6150-6154'93]
327 ---------------------------MAN--Q-------------------LSYS----
328 --------------------------------------SLGWPYQP---NASVVDTMPKE
329 MLYMIHEHWYAFPPMNPLWYSI-----LGVAMIILGIICVLGNGMVIYLMMTTKSLRTPT
330 NLLVVNLAFSDFCMMAFM-MPTMTSNCFA-ETWI--LGPFMCEVYGMAGSLFGCASIWSM
331 VMITLDRYNVIVRGMAAA-PLTHKKATLLLLFVWIWSGGW-TILPFF-GWS-----RYVP
332 EGNLTSCTVDYLTKD--WSSASYVVIYGLAVYFLPLITMIYCYFFIVHAVAEHEKQLREQ
333 AKKM------------------NVASLRA-------------------------------
334 ------------------------------------------------------------
335 ------------------NADQQKQSAECRLAKVAMMTVGLWFMAWTPYLIISWAGVF-S
336 SGT--RLTPLATIWGSVFAKANSCYNPIVYGISHPRYKAALY-QRFPSL--ACGSG-ESG
337 SD-VK-SEASA-TTTMEEK----PKIPEA-------------------------------
338 -----------------------------------------------------------
339 > 27== X07797 1 Octopus dofleini rhodopsin <>[FEBS232(1),69-72'88]
340 ---------------------------MVE--S-------------------TTLV----
341 --------------------------------------NQTWWY-----NPTV-------
342 ---DIHPHWAKFDPIPDAVYYS-----VGIFIGVVGIIGILGNGVVIYLFSKTKSLQTPA
343 NMFIINLAMSDLSFSAINGFPLKTISAFM-KKWI--FGKVACQLYGLLGGIFGFMSINTM
344 AMISIDRYNVIGRPMAASKKMSHRRAFLMIIFVWMWSIVW-SVGPVF-NWG-----AYVP
345 EGILTSCSFDYLSTD--PSTRSFILCMYFCGFMLPIIIIAFCYFNIVMSVSNHEKEMAAM
346 AKRL------------------NAKELRK-------------------------------
347 ------------------------------------------------------------
348 -------------------AQ-AGASAEMKLAKISMVIITQFMLSWSPYAIIALLAQF-G
349 PAE--WVTPYAAELPVLFAKASAIHNPIVYSVSHPKFREAIQ-TTFPWLLTCCQFD-EKE
350 CE-DA-NDAEE-EVVASER--GGESRDAAQMKEMMAMMQKMQAQQAAYQP---PPPPQGY
351 PPQGYPPQGAYPPPQGYPPQGYPPQGYPPQGYPPQGAPPQVEAPQGAPPQGVDNQAYQA
352 > 28== X70498 1 Todarodes pacificus rhodopsin <retina>[FEBS317(1-2),5-11'93]
353 ----------------------------MG--R-------------------DLRD----
354 --------------------------------------NETWWY-----NPSI-------
355 ---VVHPHWREFDQVPDAVYYS-----LGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPA
356 NMFIINLAFSDFTFSLVNGFPLMTISCFL-KKWI--FGFAACKVYGFIGGIFGFMSIMTM
357 AMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLW-AIGPIF-GWG-----AYTL
358 EGVLCNCSFDYISRD--STTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAM
359 AKRL------------------NAKELRK-------------------------------
360 ------------------------------------------------------------
361 -------------------AQ-AGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQF-G
362 PLE--WVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAIS-QTFPWVLTCCQFD-DKE
363 TE-DD-KDAET-EIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGY
364 PPQGYPPQGY--PPQGYPPQGYPP---PPQGAPPQGAPP------AAPPQGVDNQAYQA
365 > 29== L21195 1 human serotonin 5-HT7 receptor protein <placenta and fetal bra
366 ------------------------MMDVNS-SG----RPDLYGHLRSFLLPEVGRGLPDL
367 SPDG------------GADPVAGSWAPHLLS---EVTASPA---PTW--DA------PPD
368 NASGCGEQ----INYGRVEKVV-----IGSILTLITLLTIAGNCLVVISVCFVKKLRQPS
369 NYLIVSLALADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTL
370 CVISIDRYLGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLF-GWA-----QNVN
371 DDKVCLISQDF----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF-
372 -------------PGFPRVEPDSVIALNG-------------------------------
373 ---------------------IVKLQKE------------------VEECAN--------
374 ----------LSRLLKHERKNISIFKREQKAATTLGIIVGAFTVCWLPFFLLSTARPFIC
375 GTSCSCIPLWVERTFLWLGYANSLINPFIYAFFNRDLRTTYR-SLLQCQ--YRNIN-RKL
376 SA-AGMHEALKLAERPERPEFVLQNADYCRKK----------------------------
377 --------------------------------------------------GHDS-----
378 > 30== L15228 1 rat 5HT-7 serotonin receptor <>[JBC268,18200-18204'93]
379 ------------------------------------------------------------
380 -------------------------MPHLLSGFLEVTASPA---PTW--DA------PPD
381 NVSGCGEQ----INYGRVEKVV-----IGSILTLITLLTIAGNCLVVISVSFVKKLRQPS
382 NYLIVSLALADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTL
383 CVISIDRYLGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLF-GWA-----QNVN
384 DDKVCLISQDF----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF-
385 -------------PGFPRVQPESVISLNG-------------------------------
386 ---------------------VVKLQKE------------------VEECAN--------
387 ----------LSRLLKHERKNISIFKREQKAATTLGIIVGAFTVCWLPFFLLSTARPFIC
388 GTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRPTSR-SLLQCQ--YRNIN-RKL
389 SA-AGMHEALKLAERPERSEFVLQNSDHCGKK----------------------------
390 --------------------------------------------------GHDT-----
391 > 31=p A47425 serotonin receptor 5HT-7 - rat
392 ------------------------------------------------------------
393 -------------------------MPHLLSGFLEVTASPA---PTW--DA------PPD
394 NVSGCGEQ----INYGRVEKVV-----IGSILTLITLLTIAGNCLVVISVSFVKKLRQPS
395 NYLIVSLALADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTL
396 CVISIDRYLGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLF-GWA-----QNVN
397 DDKVCLISQDF----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF-
398 -------------PGFPRVQPESVISLNG-------------------------------
399 ---------------------VVKLQKE------------------VEECAN--------
400 ----------LSRLLKHERKNISIFKREQKAATTLGIIVGAFTVCWLPFFLLSTARPFIC
401 GTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRTTYR-SLLQCQ--YRNIN-RKL
402 SA-AGMHEALKLAERPERSEFVLQNSDHCGKK----------------------------
403 --------------------------------------------------GHDT-----
404 > 32== M83181 1 human serotonin receptor <>[JBC267(11),7553-7562'92]
405 -------------------------MDVLS-PG---------------------------
406 ------------------------------------QGNNT--------TSPPAPFETGG
407 NTTGIS-------DVTVSYQVI-----TSLLLGTLIFCAVLGNACVVAAIALERSLQNVA
408 NYLIGSLAVTDLMVSVLV-LPMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHL
409 CAIALDRYWAITDPIDYVNKRTPRRAAALISLTWLIGFLI-SIPPML-GWRTPEDRSDPD
410 ---ACTISKDH----------GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRKTVKK
411 VEKTGADTRHGASPAPQPKK-----SVNG--ESGSRNWRLGVESKAGGALCANGAVRQGD
412 DGAAL--EVIEVHRVGNSKEHLPLPSEAGPTPCAPAS------------------FERKN
413 ERNA-------------EAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-C
414 ESSC-HMPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFK-KIIKCK--FCRQ-----
415 ------------------------------------------------------------
416 -----------------------------------------------------------
417 > 33=p A35181 serotonin receptor class 1A - rat
418 -------------------------MDVFS-FG---------------------------
419 ------------------------------------QGNNT--------TASQEPFGTGG
420 NVTSIS-------DVTFSYQVI-----TSLLLGTLIFCAVLGNACVVAAIALERSLQNVA
421 NYLIGSLAVTDLMVSVLV-LPMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHL
422 CAIALDRYWAITDPIDYVNKRTPRRAAALISLTWLIGFLI-SIPPML-GWRTPEDRSDPD
423 ---ACTISKDH----------GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRKTVRK
424 VEKKGAGTSLGTSSAPPPKK-----SLNG--QPGSGDWRRCAENRAVGTPCTNGAVRQGD
425 DEATL--EVIEVHRVGNSKEHLPLPSESGSNSYAPAC------------------LERKN
426 ERNA-------------EAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-C
427 ESSC-HMPALLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFK-KIIKCK--FCRR-----
428 ------------------------------------------------------------
429 -----------------------------------------------------------
430 > 34== L06803 1 Lymnaea stagnalis serotonin receptor <>[PNAS90,11-15'93]
431 ---------------MANFTFGDLALDVAR-MGGLASTPS---GLRS-----TGLTTPGL
432 SPTGLVTSDFNDSYGLTGQFINGSHSSRSRD---NASANDT--------SATNM---TDD
433 RYWSLT-------VYSHEHLVL-----TSVILGLFVLCCIIGNCFVIAAVMLERSLHNVA
434 NYLILSLAVADLMVAVLV-MPLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHL
435 VAIAMDRYWAVTS-IDYIRRRSARRILLMIMVVWIVALFI-SIPPLF-GWRDPNN--DPD
436 KTGTCIISQDK----------GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQ
437 MTKARLKTEETTLVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKN
438 RAKKLPENANGVNSNSSSSERLKQIQIETAEAFANGCAEEASIAMLERQCNNGKKISSND
439 TPYS-------------RTREKLELKRERKAARTLAIITGAFLICWLPFFIIALIGPF-V
440 DPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQ-KILFGK--YRRGH-R--
441 ------------------------------------------------------------
442 -----------------------------------------------------------
443 > 35=p A47174 serotonin receptor, 5HTlym receptor - great pond snail
444 ---------------MANFTFGDLALDVAR-MGGLASTPS---GLRS-----TGLTTPGL
445 SPTGLVTSDFNDSYGLTGQFINGSHSSRSRD---NASANDT--------SATNM---TDD
446 RYWSLT-------VYSHEHLVL-----TSVILGLFVLCCIIGNCFVIAAVMLERSLHNVA
447 NYLILSLAVADLMVAVLV-MPLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHL
448 VAIAMDRYWAVTS-IDYIRRRSARRILLMIMVVWIVALFI-SIPPLF-GWRDPNN--DPD
449 KTGTCIISQDK----------GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQ
450 MTKARLKTEETTLVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKN
451 RAKKLPENANGVNSNSSSSERLKQIQIETAEAFANGCAEEASIAMLERQCNNGKKISSND
452 TPYS-------------RTREKLELKRERKAARTLAIITGAFLICWLPFFIIALIGPF-V
453 DPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQ-KILFGK--YRRGH-R--
454 ------------------------------------------------------------
455 -----------------------------------------------------------
456 > 36== X95604 1 Bombyx mori serotonin receptor <antennae>[InsectBiochem.Mol.Bi
457 ----------------MEGAEGQEELDWEA-LY---------------------LRLP--
458 -----------------------------LQ---NCSWNSTGWEPNW--NVTVV---PNT
459 TWWQAS-------APFDTPAALVRAAAKAVVLGLLILATVVGNVFVIAAILLERHLRSAA
460 NNLILSLAVADLLVACLV-MPLGAVYEVV-QRWT--LGPELCDMWTSGDVLCCTASILHL
461 VAIALDRYWAVTN-IDYIHASTAKRVGMMIACVWTVSFFV-CIAQLL-GWKDPDWNQRVS
462 EDLRCVVSQDV----------GYQIFATASSFYVPVLIILILYWRIYQTARKRIRR----
463 --RRGATARGGVGPPPVPAG---------------------------------GALVAGG
464 GSGGIAAAVVAV-----IGRPLPTISETTTTGFTNVSSNNTSPE--KQSCANGLEADPPT
465 TGYGAVAAAYYPSLVRRKPKEAADSKRERKAAKTLAIITGAFVACWLPFFVLAILVPT-C
466 DCE---VSPVLTSLSLWLGYFNSTLNPVIYTVFSPEFRHAFQ-RLLCGR--RVRRR-RA-
467 ---------------PQ-------------------------------------------
468 -----------------------------------------------------------