Mercurial > repos > nick > duplex
comparison mafft/test/sample.lins1 @ 18:e4d75f9efb90 draft
planemo upload commit b'4303231da9e48b2719b4429a29b72421d24310f4\n'-dirty
author | nick |
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date | Thu, 02 Feb 2017 18:44:31 -0500 |
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17:836fa4fe9494 | 18:e4d75f9efb90 |
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1 > 1== M63632 1 Lampetra japonica rhodopsin <>[BBRC174,1125-1132'91] | |
2 -------------------------MNGTE--G-------------------DNFYVPFS | |
3 NKTG--------------------------------LARSPYEYPQY------------- | |
4 ---YLAEPW---------KYSA-----LAAYMFFLILVGFPVNFLTLFVTVQHKKLRTPL | |
5 NYILLNLAMANLFMVLFG-FTVTMYTSMN-GYFV--FGPTMCSIEGFFATLGGEVALWSL | |
6 VVLAIERYIVICKPMGNF-RFGNTHAIMGVAFTWIMALAC-AAPPLV-GWS-----RYIP | |
7 EGMQCSCGPDYYTLNPNFNNESYVVYMFVVHFLVPFVIIFFCYGRLLCTVKEAAAAQQES | |
8 A----------------------------------------------------------- | |
9 ------------------------------------------------------------ | |
10 ----------------------STQKAEKEVTRMVVLMVIGFLVCWVPYASVAFYIFT-H | |
11 QGS--DFGATFMTLPAFFAKSSALYNPVIYILMNKQFRNCMITTLCC------GKNPLGD | |
12 DE-SG-ASTSK-TEVSSVS--TSPVSPA-------------------------------- | |
13 ----------------------------------------------------------- | |
14 > 2== U22180 1 rat opsin <rod>[J.Mol.Neurosci.5(3),207-209'94] | |
15 -------------------------MNGTE--G-------------------PNFYVPFS | |
16 NITG--------------------------------VVRSPFEQPQY------------- | |
17 ---YLAEPW---------QFSM-----LAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPL | |
18 NYILLNLAVADLFMVFGG-FTTTLYTSLH-GYFV--FGPTGCNLEGFFATLGGEIGLWSL | |
19 VVLAIERYVVVCKPMSNF-RFGENHAIMGVAFTWVMALAC-AAPPLV-GWS-----RYIP | |
20 EGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQES | |
21 A----------------------------------------------------------- | |
22 ------------------------------------------------------------ | |
23 ----------------------TTQKAEKEVTRMVIIMVIFFLICWLPYASVAMYIFT-H | |
24 QGS--NFGPIFMTLPAFFAKTASIYNPIIYIMMNKQFRNCMLTSLCC------GKNPLGD | |
25 DE-AS-ATASK-TETSQVA--PA------------------------------------- | |
26 ----------------------------------------------------------- | |
27 > 3== M92038 1 chicken green sensitive cone opsin <retina>[PNAS89,5932-5936'9 | |
28 -------------------------MNGTE--G-------------------INFYVPMS | |
29 NKTG--------------------------------VVRSPFEYPQY------------- | |
30 ---YLAEPW---------KYRL-----VCCYIFFLISTGLPINLLTLLVTFKHKKLRQPL | |
31 NYILVNLAVADLFMACFG-FTVTFYTAWN-GYFV--FGPVGCAVEGFFATLGGQVALWSL | |
32 VVLAIERYIVVCKPMGNF-RFSATHAMMGIAFTWVMAFSC-AAPPLF-GWS-----RYMP | |
33 EGMQCSCGPDYYTHNPDYHNESYVLYMFVIHFIIPVVVIFFSYGRLICKVREAAAQQQES | |
34 A----------------------------------------------------------- | |
35 ------------------------------------------------------------ | |
36 ----------------------TTQKAEKEVTRMVILMVLGFMLAWTPYAVVAFWIFT-N | |
37 KGA--DFTATLMAVPAFFSKSSSLYNPIIYVLMNKQFRNCMITTICC------GKNPFGD | |
38 EDVSSTVSQSK-TEVSSVS--SSQVSPA-------------------------------- | |
39 ----------------------------------------------------------- | |
40 > 4=p A45229 opsin, green-sensitive (clone GFgr-1) - goldfish | |
41 -------------------------MNGTE--G-------------------KNFYVPMS | |
42 NRTG--------------------------------LVRSPFEYPQY------------- | |
43 ---YLAEPW---------QFKI-----LALYLFFLMSMGLPINGLTLVVTAQHKKLRQPL | |
44 NFILVNLAVAGTIMVCFG-FTVTFYTAIN-GYFV--LGPTGCAVEGFMATLGGEVALWSL | |
45 VVLAIERYIVVCKPMGSF-KFSSSHAFAGIAFTWVMALAC-AAPPLF-GWS-----RYIP | |
46 EGMQCSCGPDYYTLNPDYNNESYVIYMFVCHFILPVAVIFFTYGRLVCTVKAAAAQQQDS | |
47 A----------------------------------------------------------- | |
48 ------------------------------------------------------------ | |
49 ----------------------STQKAEREVTKMVILMVFGFLIAWTPYATVAAWIFF-N | |
50 KGA--DFSAKFMAIPAFFSKSSALYNPVIYVLLNKQFRNCMLTTIFC------GKNPLGD | |
51 DE-SSTVSTSK-TEVSSVS--PA------------------------------------- | |
52 ----------------------------------------------------------- | |
53 > 5=p B45229 opsin, green-sensitive (clone GFgr-2) - goldfish | |
54 -------------------------MNGTE--G-------------------NNFYVPLS | |
55 NRTG--------------------------------LVRSPFEYPQY------------- | |
56 ---YLAEPW---------QFKL-----LAVYMFFLICLGLPINGLTLICTAQHKKLRQPL | |
57 NFILVNLAVAGAIMVCFG-FTVTFYTAIN-GYFA--LGPTGCAVEGFMATLGGEVALWSL | |
58 VVLAIERYIVVCKPMGSF-KFSSTHASAGIAFTWVMAMAC-AAPPLV-GWS-----RYIP | |
59 EGIQCSCGPDYYTLNPEYNNESYVLYMFICHFILPVTIIFFTYGRLVCTVKAAAAQQQDS | |
60 A----------------------------------------------------------- | |
61 ------------------------------------------------------------ | |
62 ----------------------STQKAEREVTKMVILMVLGFLVAWTPYATVAAWIFF-N | |
63 KGA--AFSAQFMAIPAFFSKTSALYNPVIYVLLNKQFRSCMLTTLFC------GKNPLGD | |
64 EE-SSTVSTSK-TEVSSVS--PA------------------------------------- | |
65 ----------------------------------------------------------- | |
66 > 6== L11864 1 Carassius auratus blue cone opsin <retina>[Biochemistry32,208- | |
67 -------------------------MKQVPEFH-------------------EDFYIPIP | |
68 LDIN------------------------------NLSAYSPFLVPQD------------- | |
69 ---HLGNQG---------IFMA-----MSVFMFFIFIGGASINILTILCTIQFKKLRSHL | |
70 NYILVNLSIANLFVAIFG-SPLSFYSFFN-RYFI--FGATACKIEGFLATLGGMVGLWSL | |
71 AVVAFERWLVICKPLGNF-TFKTPHAIAGCILPWISALAA-SLPPLF-GWS-----RYIP | |
72 EGLQCSCGPDWYTTNNKYNNESYVMFLFCFCFAVPFGTIVFCYGQLLITLKLAAKAQADS | |
73 A----------------------------------------------------------- | |
74 ------------------------------------------------------------ | |
75 ----------------------STQKAEREVTKMVVVMVLGFLVCWAPYASFSLWIVS-H | |
76 RGE--EFDLRMATIPSCLSKASTVYNPVIYVLMNKQFRSCMM-KMVC------GKN-IEE | |
77 DE-AS-TSSQV-TQVSSVA--PEK------------------------------------ | |
78 ----------------------------------------------------------- | |
79 > 7== M13299 1 human BCP <>[Science232(4747),193-202'86] | |
80 -------------------------MRKMS--E-------------------EEFYL--- | |
81 --FK------------------------------NISSVGPWDGPQY------------- | |
82 ---HIAPVW---------AFYL-----QAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPL | |
83 NYILVNVSFGGFLLCIFS-VFPVFVASCN-GYFV--FGRHVCALEGFLGTVAGLVTGWSL | |
84 AFLAFERYIVICKPFGNF-RFSSKHALTVVLATWTIGIGV-SIPPFF-GWS-----RFIP | |
85 EGLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQES | |
86 A----------------------------------------------------------- | |
87 ------------------------------------------------------------ | |
88 ----------------------TTQKAEREVSRMVVVMVGSFCVCYVPYAAFAMYMVN-N | |
89 RNH--GLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIM-KMVC------GKA-MTD | |
90 ES-DT-CSSQK-TEVSTVS--STQVGPN-------------------------------- | |
91 ----------------------------------------------------------- | |
92 > 8=opsin, greensensitive human (fragment) S07060 | |
93 ------------------------------------------------------------ | |
94 ------------------------------------------------------------ | |
95 ------------------------------------------------------------ | |
96 ----------DLAETVIA-STISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSL | |
97 AIISWERWLVVCKPFGNV-RFDAKLAIVGIAFSWIWAAVW-TAPPIF-GWS-----RYWP | |
98 HGLKTSCGPDVFSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAIRAVAKQQKES | |
99 E----------------------------------------------------------- | |
100 ------------------------------------------------------------ | |
101 ----------------------STQKAEKEVTRMVVVMVLAFC----------------- | |
102 ------------------------------------------------------------ | |
103 ------------------------------------------------------------ | |
104 ----------------------------------------------------------- | |
105 > 9== K03494 1 human GCP <>[Science232(4747),193-202'86] | |
106 MAQQWS-LQRLAGRHPQDS-----YEDSTQ--S-------------------SIFTYTNS | |
107 N-----------------------------------STRGPFEGPNY------------- | |
108 ---HIAPRW---------VYHL-----TSVWMIFVVIASVFTNGLVLAATMKFKKLRHPL | |
109 NWILVNLAVADLAETVIA-STISVVNQVY-GYFV--LGHPMCVLEGYTVSLCGITGLWSL | |
110 AIISWERWMVVCKPFGNV-RFDAKLAIVGIAFSWIWAAVW-TAPPIF-GWS-----RYWP | |
111 HGLKTSCGPDVFSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAIRAVAKQQKES | |
112 E----------------------------------------------------------- | |
113 ------------------------------------------------------------ | |
114 ----------------------STQKAEKEVTRMVVVMVLAFCFCWGPYAFFACFAAA-N | |
115 PGY--PFHPLMAALPAFFAKSATIYNPVIYVFMNRQFRNCIL-QLF-------GKK-VDD | |
116 GS-EL-SSASK-TEVSSV----SSVSPA-------------------------------- | |
117 ----------------------------------------------------------- | |
118 > 10== Z68193 1 human Red Opsin <>[] | |
119 MAQQWS-LQRLAGRHPQDS-----YEDSTQ--S-------------------SIFTYTNS | |
120 N-----------------------------------STRGPFEGPNY------------- | |
121 ---HIAPRW---------VYHL-----TSVWMIFVVTASVFTNGLVLAATMKFKKLRHPL | |
122 NWILVNLAVADLAETVIA-STISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSL | |
123 AIISWERWLVVCKPFGNV-RFDAKLAIVGIAFSWIWSAVW-TAPPIF-GWS-----RYWP | |
124 HGLKTSCGPDVFSGSSYPGVQSYMIVLMVTCCIIPLAIIMLCYLQVWLAIRAVAKQQKES | |
125 E----------------------------------------------------------- | |
126 ------------------------------------------------------------ | |
127 ----------------------STQKAEKEVTRMVVVMIFAYCVCWGPYTFFACFAAA-N | |
128 PGY--AFHPLMAALPAYFAKSATIYNPVIYVFMNRQFRNCIL-QLF-------GKK-VDD | |
129 GS-EL-SSASK-TEVSSV----SSVSPA-------------------------------- | |
130 ----------------------------------------------------------- | |
131 > 11== M92036 1 Gecko gecko P521 <retina>[PNAS89,6841-6845'92] | |
132 MTEAWNVAVFAARRSRDD-------DDTTR--G-------------------SVFTYTNT | |
133 N-----------------------------------NTRGPFEGPNY------------- | |
134 ---HIAPRW---------VYNL-----VSFFMIIVVIASCFTNGLVLVATAKFKKLRHPL | |
135 NWILVNLAFVDLVETLVA-STISVFNQIF-GYFI--LGHPLCVIEGYVVSSCGITGLWSL | |
136 AIISWERWFVVCKPFGNI-KFDSKLAIIGIVFSWVWAWGW-SAPPIF-GWS-----RYWP | |
137 HGLKTSCGPDVFSGSVELGCQSFMLTLMITCCFLPLFIIIVCYLQVWMAIRAVAAQQKES | |
138 E----------------------------------------------------------- | |
139 ------------------------------------------------------------ | |
140 ----------------------STQKAEREVSRMVVVMIVAFCICWGPYASFVSFAAA-N | |
141 PGY--AFHPLAAALPAYFAKSATIYNPVIYVFMNRQFRNCIM-QLF-------GKK-VDD | |
142 GS-EA-STTSR-TEVSSVS--NSSVAPA-------------------------------- | |
143 ----------------------------------------------------------- | |
144 > 12== M62903 1 chicken visual pigment <>[BBRC173,1212-1217'90] | |
145 MA-AWE-AAFAARRRHEE-------EDTTR--D-------------------SVFTYTNS | |
146 N-----------------------------------NTRGPFEGPNY------------- | |
147 ---HIAPRW---------VYNL-----TSVWMIFVVAASVFTNGLVLVATWKFKKLRHPL | |
148 NWILVNLAVADLGETVIA-STISVINQIS-GYFI--LGHPMCVVEGYTVSACGITALWSL | |
149 AIISWERWFVVCKPFGNI-KFDGKLAVAGILFSWLWSCAW-TAPPIF-GWS-----RYWP | |
150 HGLKTSCGPDVFSGSSDPGVQSYMVVLMVTCCFFPLAIIILCYLQVWLAIRAVAAQQKES | |
151 E----------------------------------------------------------- | |
152 ------------------------------------------------------------ | |
153 ----------------------STQKAEKEVSRMVVVMIVAYCFCWGPYTFFACFAAA-N | |
154 PGY--AFHPLAAALPAYFAKSATIYNPIIYVFMNRQFRNCIL-QLF-------GKK-VDD | |
155 GS-EV-ST-SR-TEVSSVS--NSSVSPA-------------------------------- | |
156 ----------------------------------------------------------- | |
157 > 13== S75720 1 chicken P-opsin <>[Science267(5203),1502-1506'95] | |
158 -----------------------------M--S-------------------SNSSQAPP | |
159 N-----------------------------------GTPGPFDGPQW------------- | |
160 --PYQAPQS---------TYVG-----VAVLMGTVVACASVVNGLVIVVSICYKKLRSPL | |
161 NYILVNLAVADLLVTLCG-SSVSLSNNIN-GFFV--FGRRMCELEGFMVSLTGIVGLWSL | |
162 AILALERYVVVCKPLGDF-QFQRRHAVSGCAFTWGWALLW-SAPPLL-GWS-----SYVP | |
163 EGLRTSCGPNWYTGGSN--NNSYILSLFVTCFVLPLSLILFSYTNLLLTLRAAAAQQKEA | |
164 D----------------------------------------------------------- | |
165 ------------------------------------------------------------ | |
166 ----------------------TTQRAEREVTRMVIVMVMAFLLCWLPYSTFALVVAT-H | |
167 KGI--IIQPVLASLPSYFSKTATVYNPIIYVFMNKQFQSCLL-EMLCCG--YQPQR-TGK | |
168 AS-PG-TPGPH-ADVTAAG-LRNKVMPAHPV----------------------------- | |
169 ----------------------------------------------------------- | |
170 > 14== M17718 1 D.melanogaster Rh3 <>[J.Neurosci.7,1550-1557'87] | |
171 ----------------MESGNVSSSLFGNV--S-------------------TALR---- | |
172 ---P--------------------------------EARLSA---E---TRLLGWNVPPE | |
173 ELRHIPEHWLTYPEPPESMNYL-----LGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPS | |
174 NILVINLAFCDFMMM-VK-TPIFIYNSFH-QGYA--LGHLGCQIFGIIGSYTGIAAGATN | |
175 AFIAYDRFNVITRPMEG--KMTHGKAIAMIIFIYMYATPW-VVACYTETWG-----RFVP | |
176 EGYLTSCTFDYLTDN--FDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKALRDQ | |
177 AKKM------------------NVESLRS------------------------------- | |
178 ------------------------------------------------------------ | |
179 ------------------NVDKNKETAEIRIAKAAITICFLFFCSWTPYGVMSLIGAF-G | |
180 DKT--LLTPGATMIPACACKMVACIDPFVYAISHPRYRMELQ-KRCPWL--ALNEK-APE | |
181 SS-AV-ASTST-TQEPQQT----TAA---------------------------------- | |
182 ----------------------------------------------------------- | |
183 > 15== X65879 1 Drosophila pseudoobscura Dpse\Rh3 <>[Genetics132(1),193-204'92 | |
184 ----------------MEYHNVSSVL-GNV--S-------------------SVLR---- | |
185 ---P--------------------------------DARLSA---E---SRLLGWNVPPD | |
186 ELRHIPEHWLIYPEPPESMNYL-----LGTLYIFFTVISMIGNGLVMWVFSAAKSLRTPS | |
187 NILVINLAFCDFMMM-IK-TPIFIYNSFH-QGYA--LGHLGCQIFGVIGSYTGIAAGATN | |
188 AFIAYDRYNVITRPMEG--KMTHGKAIAMIIFIYLYATPW-VVACYTESWG-----RFVP | |
189 EGYLTSCTFDYLTDN--FDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKALRDQ | |
190 AKKM------------------NVDSLRS------------------------------- | |
191 ------------------------------------------------------------ | |
192 ------------------NVDKSKEAAEIRIAKAAITICFLFFASWTPYGVMSLIGAF-G | |
193 DKT--LLTPGATMIPACTCKMVACIDPFVYAISHPRYRMELQ-KRCPWL--AISEK-APE | |
194 SR-AA-ISTST-TQEQQQT----TAA---------------------------------- | |
195 ----------------------------------------------------------- | |
196 > 16== M17730 1 D.melanogaster Rh4 opsin <>[J.Neurosci.7,1558-1566'87] | |
197 ----------------------MEPLCNAS--E-------------------PPLR---- | |
198 ---P--------------------------------EAR-SSGNGD---LQFLGWNVPPD | |
199 QIQYIPEHWLTQLEPPASMHYM-----LGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPS | |
200 NMFVLNLAVFDLIMC-LK-APIF--NSFH-RGFAIYLGNTWCQIFASIGSYSGIGAGMTN | |
201 AAIGYDRYNVITKPMNR--NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFWD-----RFVP | |
202 EGYLTSCSFDYLSDN--FDTRLFVGTIFFFSFVCPTLMILYYYSQIVGHVFSHEKALREQ | |
203 AKKM------------------NVESLRS------------------------------- | |
204 ------------------------------------------------------------ | |
205 ------------------NVDKSKETAEIRIAKAAITICFLFFVSWTPYGVMSLIGAF-G | |
206 DKS--LLTQGATMIPACTCKLVACIDPFVYAISHPRYRLELQ-KRCPWL--GVNEK-SGE | |
207 IS-SA-QSTTT-QEQQQTT----AA----------------------------------- | |
208 ----------------------------------------------------------- | |
209 > 17== X65880 1 Drosophila pseudoobscura Dpse\Rh4 <>[Genetics132(1),193-204'92 | |
210 ----------------------MDALCNAS--E-------------------PPLR---- | |
211 ---P--------------------------------EARMSSGSDE---LQFLGWNVPPD | |
212 QIQYIPEHWLTQLEPPASMHYM-----LGVFYIFLFFASTLGNGMVIWIFSTSKSLRTPS | |
213 NMFVLNLAVFDLIMC-LK-APIFIYNSFH-RGFA--LGNTWCQIFASIGSYSGIGAGMTN | |
214 AAIGYDRYNVITKPMNR--NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFWD-----RFVP | |
215 EGYLTSCSFDYLSDN--FDTRLFVGTIFLFSFVVPTLMILYYYSQIVGHVFNHEKALREQ | |
216 AKKM------------------NVESLRS------------------------------- | |
217 ------------------------------------------------------------ | |
218 ------------------NVDKSKETAEIRIAKAAITICFLFFVSWTPYGVMSLIGAF-G | |
219 DKS--LLTPGATMIPACTCKLVACIEPFVYAISHPRYRMELQ-KRCPWL--GVNEK-SGE | |
220 AS-SA-QSTTT-QEQTQQT----SAA---------------------------------- | |
221 ----------------------------------------------------------- | |
222 > 18== D50584 1 Hemigrapsus sanguineus opsin BcRh2 <compound eye>[J.Exp.Biol.1 | |
223 -------------------------MTNAT--G-------------------PQMAY--- | |
224 --YG--------------------------------AASMDFGYPE---GVSIVDFVRPE | |
225 IKPYVHQHWYNYPPVNPMWHYL-----LGVIYLFLGTVSIFGNGLVIYLFNKSAALRTPA | |
226 NILVVNLALSDLIMLTTN-VPFFTYNCFSGGVWM--FSPQYCEIYACLGAITGVCSIWLL | |
227 CMISFDRYNIICNGFNGP-KLTTGKAVVFALISWVIAIGC-ALPPFF-GWG-----NYIL | |
228 EGILDSCSYDYLTQD--FNTFSYNIFIFVFDYFLPAAIIVFSYVFIVKAIFAHEAAMRAQ | |
229 AKKM------------------NVSTLRS------------------------------- | |
230 ------------------------------------------------------------ | |
231 -------------------NEADAQRAEIRIAKTALVNVSLWFICWTPYALISLKGVM-G | |
232 DTS--GITPLVSTLPALLAKSCSCYNPFVYAISHPKYRLAIT-QHLPWF--CVHET-ETK | |
233 SN-DD-SQSNS-TVAQDKA----------------------------------------- | |
234 ----------------------------------------------------------- | |
235 > 19== D50583 1 Hemigrapsus sanguineus opsin BcRh1 <compound eye>[J.Exp.Biol.1 | |
236 -------------------------MANVT--G-------------------PQMAF--- | |
237 --YG--------------------------------SGAATFGYPE---GMTVADFVPDR | |
238 VKHMVLDHWYNYPPVNPMWHYL-----LGVVYLFLGVISIAGNGLVIYLYMKSQALKTPA | |
239 NMLIVNLALSDLIMLTTN-FPPFCYNCFSGGRWM--FSGTYCEIYAALGAITGVCSIWTL | |
240 CMISFDRYNIICNGFNGP-KLTQGKATFMCGLAWVISVGW-SLPPFF-GWG-----SYTL | |
241 EGILDSCSYDYFTRD--MNTITYNICIFIFDFFLPASVIVFSYVFIVKAIFAHEAAMRAQ | |
242 AKKM------------------NVTNLRS------------------------------- | |
243 ------------------------------------------------------------ | |
244 -------------------NEAETQRAEIRIAKTALVNVSLWFICWTPYAAITIQGLL-G | |
245 NAE--GITPLLTTLPALLAKSCSCYNPFVYAISHPKFRLAIT-QHLPWF--CVHEK-DPN | |
246 DV-EE-NQSSN-TQTQEKS----------------------------------------- | |
247 ----------------------------------------------------------- | |
248 > 20== K02320 1 D.melanogaster opsin <>[Cell40,851-858'85] | |
249 ----------------MES---FAVAAAQL--G-------------------PHFA---- | |
250 --------------------------------------PLS--------NGSVVDKVTPD | |
251 MAHLISPYWNQFPAMDPIWAKI-----LTAYMIMIGMISWCGNGVVIYIFATTKSLRTPA | |
252 NLLVINLAISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSM | |
253 CMISLDRYQVIVKGMAGR-PMTIPLALGKM---------------------------YVP | |
254 EGNLTSCGIDYLERD--WNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQ | |
255 AKKM------------------NVKSLRS------------------------------- | |
256 ------------------------------------------------------------ | |
257 -------------------SEDAEKSAEGKLAKVALVTITLWFMAWTPYLVINCMGLF-K | |
258 F-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALK-EKCPCC--VFGKV-DDG | |
259 KS-SD-AQSQA-TASEAES----KA----------------------------------- | |
260 ----------------------------------------------------------- | |
261 > 21== K02315 1 D.melanogaster ninaE <>[Cell40,839-850'85] | |
262 ----------------MES---FAVAAAQL--G-------------------PHFA---- | |
263 --------------------------------------PLS--------NGSVVDKVTPD | |
264 MAHLISPYWNQFPAMDPIWAKI-----LTAYMIMIGMISWCGNGVVIYIFATTKSLRTPA | |
265 NLLVINLAISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSM | |
266 CMISLDRYQVIVKGMAGR-PMTIPLALGKIAYIWFMSSIW-CLAPAF-GWS-----RYVP | |
267 EGNLTSCGIDYLERD--WNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQ | |
268 AKKM------------------NVKSLRS------------------------------- | |
269 ------------------------------------------------------------ | |
270 -------------------SEDAEKSAEGKLAKVALVTITLWFMAWTPYLVINCMGLF-K | |
271 F-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALK-EKCPCC--VFGKV-DDG | |
272 KS-SD-AQSQA-TASEAES----KA----------------------------------- | |
273 ----------------------------------------------------------- | |
274 > 22== X65877 1 Drosophila pseudoobscura Dpse\ninaE <>[Genetics132(1),193-204' | |
275 ----------------MDS---FAAVATQL--G-------------------PQFA---- | |
276 --------------------------------------APS--------NGSVVDKVTPD | |
277 MAHLISPYWDQFPAMDPIWAKI-----LTAYMIIIGMISWCGNGVVIYIFATTKSLRTPA | |
278 NLLVINLAISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSM | |
279 CMISLDRYQVIVKGMAGR-PMTIPLALGKIAYIWFMSTIWCCLAPVF-GWS-----RYVP | |
280 EGNLTSCGIDYLERD--WNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQ | |
281 AKKM------------------NVKSLRS------------------------------- | |
282 ------------------------------------------------------------ | |
283 -------------------SEDADKSAEGKLAKVALVTISLWFMAWTPYLVINCMGLF-K | |
284 F-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALK-EKCPCC--VFGKV-DDG | |
285 KS-SE-AQSQA-TTSEAES----KA----------------------------------- | |
286 ----------------------------------------------------------- | |
287 > 23== M12896 1 D.melanogaster Rh2 <>[Cell44,705-710'86] | |
288 -----------MERSHLPE---TPFDLAHS--G-------------------PRFQ---- | |
289 --------------------------------------AQSSG------NGSVLDNVLPD | |
290 MAHLVNPYWSRFAPMDPMMSKI-----LGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPA | |
291 NLLVLNLAFSDFCMMASQ-SPVMIINFYY-ETWV--LGPLWCDIYAGCGSLFGCVSIWSM | |
292 CMIAFDRYNVIVKGINGT-PMTIKTSIMKILFIWMMAVFW-TVMPLI-GWS-----AYVP | |
293 EGNLTACSIDYMTRM--WNPRSYLITYSLFVYYTPLFLICYSYWFIIAAVAAHEKAMREQ | |
294 AKKM------------------NVKSLRS------------------------------- | |
295 ------------------------------------------------------------ | |
296 -------------------SEDCDKSAEGKLAKVALTTISLWFMAWTPYLVICYFGLF-K | |
297 I-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIVLK-EKCPMC--VFGNT-DEP | |
298 KP-DA-PASDTETTSEADS----KA----------------------------------- | |
299 ----------------------------------------------------------- | |
300 > 24== X65878 1 Drosophila pseudoobscura Dpse\Rh2 <>[Genetics132(1),193-204'92 | |
301 -----------MERSLLPE---PPLAMALL--G-------------------PRFE---- | |
302 --------------------------------------AQTGG------NRSVLDNVLPD | |
303 MAPLVNPHWSRFAPMDPTMSKI-----LGLFTLVILIISCCGNGVVVYIFGGTKSLRTPA | |
304 NLLVLNLAFSDFCMMASQ-SPVMIINFYY-ETWV--LGPLWCDIYAACGSLFGCVSIWSM | |
305 CMIAFDRYNVIVKGINGT-PMTIKTSIMKIAFIWMMAVFW-TIMPLI-GWS-----SYVP | |
306 EGNLTACSIDYMTRQ--WNPRSYLITYSLFVYYTPLFMICYSYWFIIATVAAHEKAMRDQ | |
307 AKKM------------------NVKSLRS------------------------------- | |
308 ------------------------------------------------------------ | |
309 -------------------SEDCDKSAENKLAKVALTTISLWFMAWTPYLIICYFGLF-K | |
310 I-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPNDRLVLK-EKCPMC--VCGTT-DEP | |
311 KP-DA-PPSDTETTSEAES----KD----------------------------------- | |
312 ----------------------------------------------------------- | |
313 > 25== U26026 1 Apis mellifera long-wavelength rhodopsin <>[] | |
314 -------------------------MIAVS--G-------------------PSYE---- | |
315 --------------------------------------AFSYGGQARFNNQTVVDKVPPD | |
316 MLHLIDANWYQYPPLNPMWHGI-----LGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPS | |
317 NLFVINLAISNFLMMFCM-SPPMVINCYY-ETWV--LGPLFCQIYAMLGSLFGCGSIWTM | |
318 TMIAFDRYNVIVKGLSGK-PLSINGALIRIIAIWLFSLGW-TIAPMF-GWN-----RYVP | |
319 EGNMTACGTDYFNRG--LLSASYLVCYGIWVYFVPLFLIIYSYWFIIQAVAAHEKNMREQ | |
320 AKKM------------------NVASLRS------------------------------- | |
321 ------------------------------------------------------------ | |
322 -------------------SENQNTSAECKLAKVALMTISLWFMAWTPYLVINFSGIF-N | |
323 L-V--KISPLFTIWGSLFAKANAVYNPIVYGISHPKYRAALF-AKFPSL--AC-AA-EPS | |
324 SD-AV-STTSG-TTTVTDN----EKSNA-------------------------------- | |
325 ----------------------------------------------------------- | |
326 > 26== L03781 1 Limulus polyphemus opsin <>[PNAS90,6150-6154'93] | |
327 ---------------------------MAN--Q-------------------LSYS---- | |
328 --------------------------------------SLGWPYQP---NASVVDTMPKE | |
329 MLYMIHEHWYAFPPMNPLWYSI-----LGVAMIILGIICVLGNGMVIYLMMTTKSLRTPT | |
330 NLLVVNLAFSDFCMMAFM-MPTMTSNCFA-ETWI--LGPFMCEVYGMAGSLFGCASIWSM | |
331 VMITLDRYNVIVRGMAAA-PLTHKKATLLLLFVWIWSGGW-TILPFF-GWS-----RYVP | |
332 EGNLTSCTVDYLTKD--WSSASYVVIYGLAVYFLPLITMIYCYFFIVHAVAEHEKQLREQ | |
333 AKKM------------------NVASLRA------------------------------- | |
334 ------------------------------------------------------------ | |
335 ------------------NADQQKQSAECRLAKVAMMTVGLWFMAWTPYLIISWAGVF-S | |
336 SGT--RLTPLATIWGSVFAKANSCYNPIVYGISHPRYKAALY-QRFPSL--ACGSG-ESG | |
337 SD-VK-SEASA-TTTMEEK----PKIPEA------------------------------- | |
338 ----------------------------------------------------------- | |
339 > 27== X07797 1 Octopus dofleini rhodopsin <>[FEBS232(1),69-72'88] | |
340 ---------------------------MVE--S-------------------TTLV---- | |
341 --------------------------------------NQTWWY-----NPTV------- | |
342 ---DIHPHWAKFDPIPDAVYYS-----VGIFIGVVGIIGILGNGVVIYLFSKTKSLQTPA | |
343 NMFIINLAMSDLSFSAINGFPLKTISAFM-KKWI--FGKVACQLYGLLGGIFGFMSINTM | |
344 AMISIDRYNVIGRPMAASKKMSHRRAFLMIIFVWMWSIVW-SVGPVF-NWG-----AYVP | |
345 EGILTSCSFDYLSTD--PSTRSFILCMYFCGFMLPIIIIAFCYFNIVMSVSNHEKEMAAM | |
346 AKRL------------------NAKELRK------------------------------- | |
347 ------------------------------------------------------------ | |
348 -------------------AQ-AGASAEMKLAKISMVIITQFMLSWSPYAIIALLAQF-G | |
349 PAE--WVTPYAAELPVLFAKASAIHNPIVYSVSHPKFREAIQ-TTFPWLLTCCQFD-EKE | |
350 CE-DA-NDAEE-EVVASER--GGESRDAAQMKEMMAMMQKMQAQQAAYQP---PPPPQGY | |
351 PPQGYPPQGAYPPPQGYPPQGYPPQGYPPQGYPPQGAPPQVEAPQGAPPQGVDNQAYQA | |
352 > 28== X70498 1 Todarodes pacificus rhodopsin <retina>[FEBS317(1-2),5-11'93] | |
353 ----------------------------MG--R-------------------DLRD---- | |
354 --------------------------------------NETWWY-----NPSI------- | |
355 ---VVHPHWREFDQVPDAVYYS-----LGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPA | |
356 NMFIINLAFSDFTFSLVNGFPLMTISCFL-KKWI--FGFAACKVYGFIGGIFGFMSIMTM | |
357 AMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLW-AIGPIF-GWG-----AYTL | |
358 EGVLCNCSFDYISRD--STTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAM | |
359 AKRL------------------NAKELRK------------------------------- | |
360 ------------------------------------------------------------ | |
361 -------------------AQ-AGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQF-G | |
362 PLE--WVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAIS-QTFPWVLTCCQFD-DKE | |
363 TE-DD-KDAET-EIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGY | |
364 PPQGYPPQGY--PPQGYPPQGYPP---PPQGAPPQGAPP------AAPPQGVDNQAYQA | |
365 > 29== L21195 1 human serotonin 5-HT7 receptor protein <placenta and fetal bra | |
366 ------------------------MMDVNS-SG----RPDLYGHLRSFLLPEVGRGLPDL | |
367 SPDG------------GADPVAGSWAPHLLS---EVTASPA---PTW--DA------PPD | |
368 NASGCGEQ----INYGRVEKVV-----IGSILTLITLLTIAGNCLVVISVCFVKKLRQPS | |
369 NYLIVSLALADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTL | |
370 CVISIDRYLGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLF-GWA-----QNVN | |
371 DDKVCLISQDF----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF- | |
372 -------------PGFPRVEPDSVIALNG------------------------------- | |
373 ---------------------IVKLQKE------------------VEECAN-------- | |
374 ----------LSRLLKHERKNISIFKREQKAATTLGIIVGAFTVCWLPFFLLSTARPFIC | |
375 GTSCSCIPLWVERTFLWLGYANSLINPFIYAFFNRDLRTTYR-SLLQCQ--YRNIN-RKL | |
376 SA-AGMHEALKLAERPERPEFVLQNADYCRKK---------------------------- | |
377 --------------------------------------------------GHDS----- | |
378 > 30== L15228 1 rat 5HT-7 serotonin receptor <>[JBC268,18200-18204'93] | |
379 ------------------------------------------------------------ | |
380 -------------------------MPHLLSGFLEVTASPA---PTW--DA------PPD | |
381 NVSGCGEQ----INYGRVEKVV-----IGSILTLITLLTIAGNCLVVISVSFVKKLRQPS | |
382 NYLIVSLALADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTL | |
383 CVISIDRYLGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLF-GWA-----QNVN | |
384 DDKVCLISQDF----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF- | |
385 -------------PGFPRVQPESVISLNG------------------------------- | |
386 ---------------------VVKLQKE------------------VEECAN-------- | |
387 ----------LSRLLKHERKNISIFKREQKAATTLGIIVGAFTVCWLPFFLLSTARPFIC | |
388 GTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRPTSR-SLLQCQ--YRNIN-RKL | |
389 SA-AGMHEALKLAERPERSEFVLQNSDHCGKK---------------------------- | |
390 --------------------------------------------------GHDT----- | |
391 > 31=p A47425 serotonin receptor 5HT-7 - rat | |
392 ------------------------------------------------------------ | |
393 -------------------------MPHLLSGFLEVTASPA---PTW--DA------PPD | |
394 NVSGCGEQ----INYGRVEKVV-----IGSILTLITLLTIAGNCLVVISVSFVKKLRQPS | |
395 NYLIVSLALADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTL | |
396 CVISIDRYLGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLF-GWA-----QNVN | |
397 DDKVCLISQDF----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF- | |
398 -------------PGFPRVQPESVISLNG------------------------------- | |
399 ---------------------VVKLQKE------------------VEECAN-------- | |
400 ----------LSRLLKHERKNISIFKREQKAATTLGIIVGAFTVCWLPFFLLSTARPFIC | |
401 GTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRTTYR-SLLQCQ--YRNIN-RKL | |
402 SA-AGMHEALKLAERPERSEFVLQNSDHCGKK---------------------------- | |
403 --------------------------------------------------GHDT----- | |
404 > 32== M83181 1 human serotonin receptor <>[JBC267(11),7553-7562'92] | |
405 -------------------------MDVLS-PG--------------------------- | |
406 ------------------------------------QGNNT--------TSPPAPFETGG | |
407 NTTGIS-------DVTVSYQVI-----TSLLLGTLIFCAVLGNACVVAAIALERSLQNVA | |
408 NYLIGSLAVTDLMVSVLV-LPMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHL | |
409 CAIALDRYWAITDPIDYVNKRTPRRAAALISLTWLIGFLI-SIPPML-GWRTPEDRSDPD | |
410 ---ACTISKDH----------GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRKTVKK | |
411 VEKTGADTRHGASPAPQPKK-----SVNG--ESGSRNWRLGVESKAGGALCANGAVRQGD | |
412 DGAAL--EVIEVHRVGNSKEHLPLPSEAGPTPCAPAS------------------FERKN | |
413 ERNA-------------EAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-C | |
414 ESSC-HMPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFK-KIIKCK--FCRQ----- | |
415 ------------------------------------------------------------ | |
416 ----------------------------------------------------------- | |
417 > 33=p A35181 serotonin receptor class 1A - rat | |
418 -------------------------MDVFS-FG--------------------------- | |
419 ------------------------------------QGNNT--------TASQEPFGTGG | |
420 NVTSIS-------DVTFSYQVI-----TSLLLGTLIFCAVLGNACVVAAIALERSLQNVA | |
421 NYLIGSLAVTDLMVSVLV-LPMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHL | |
422 CAIALDRYWAITDPIDYVNKRTPRRAAALISLTWLIGFLI-SIPPML-GWRTPEDRSDPD | |
423 ---ACTISKDH----------GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRKTVRK | |
424 VEKKGAGTSLGTSSAPPPKK-----SLNG--QPGSGDWRRCAENRAVGTPCTNGAVRQGD | |
425 DEATL--EVIEVHRVGNSKEHLPLPSESGSNSYAPAC------------------LERKN | |
426 ERNA-------------EAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-C | |
427 ESSC-HMPALLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFK-KIIKCK--FCRR----- | |
428 ------------------------------------------------------------ | |
429 ----------------------------------------------------------- | |
430 > 34== L06803 1 Lymnaea stagnalis serotonin receptor <>[PNAS90,11-15'93] | |
431 ---------------MANFTFGDLALDVAR-MGGLASTPS---GLRS-----TGLTTPGL | |
432 SPTGLVTSDFNDSYGLTGQFINGSHSSRSRD---NASANDT--------SATNM---TDD | |
433 RYWSLT-------VYSHEHLVL-----TSVILGLFVLCCIIGNCFVIAAVMLERSLHNVA | |
434 NYLILSLAVADLMVAVLV-MPLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHL | |
435 VAIAMDRYWAVTS-IDYIRRRSARRILLMIMVVWIVALFI-SIPPLF-GWRDPNN--DPD | |
436 KTGTCIISQDK----------GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQ | |
437 MTKARLKTEETTLVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKN | |
438 RAKKLPENANGVNSNSSSSERLKQIQIETAEAFANGCAEEASIAMLERQCNNGKKISSND | |
439 TPYS-------------RTREKLELKRERKAARTLAIITGAFLICWLPFFIIALIGPF-V | |
440 DPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQ-KILFGK--YRRGH-R-- | |
441 ------------------------------------------------------------ | |
442 ----------------------------------------------------------- | |
443 > 35=p A47174 serotonin receptor, 5HTlym receptor - great pond snail | |
444 ---------------MANFTFGDLALDVAR-MGGLASTPS---GLRS-----TGLTTPGL | |
445 SPTGLVTSDFNDSYGLTGQFINGSHSSRSRD---NASANDT--------SATNM---TDD | |
446 RYWSLT-------VYSHEHLVL-----TSVILGLFVLCCIIGNCFVIAAVMLERSLHNVA | |
447 NYLILSLAVADLMVAVLV-MPLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHL | |
448 VAIAMDRYWAVTS-IDYIRRRSARRILLMIMVVWIVALFI-SIPPLF-GWRDPNN--DPD | |
449 KTGTCIISQDK----------GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQ | |
450 MTKARLKTEETTLVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKN | |
451 RAKKLPENANGVNSNSSSSERLKQIQIETAEAFANGCAEEASIAMLERQCNNGKKISSND | |
452 TPYS-------------RTREKLELKRERKAARTLAIITGAFLICWLPFFIIALIGPF-V | |
453 DPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQ-KILFGK--YRRGH-R-- | |
454 ------------------------------------------------------------ | |
455 ----------------------------------------------------------- | |
456 > 36== X95604 1 Bombyx mori serotonin receptor <antennae>[InsectBiochem.Mol.Bi | |
457 ----------------MEGAEGQEELDWEA-LY---------------------LRLP-- | |
458 -----------------------------LQ---NCSWNSTGWEPNW--NVTVV---PNT | |
459 TWWQAS-------APFDTPAALVRAAAKAVVLGLLILATVVGNVFVIAAILLERHLRSAA | |
460 NNLILSLAVADLLVACLV-MPLGAVYEVV-QRWT--LGPELCDMWTSGDVLCCTASILHL | |
461 VAIALDRYWAVTN-IDYIHASTAKRVGMMIACVWTVSFFV-CIAQLL-GWKDPDWNQRVS | |
462 EDLRCVVSQDV----------GYQIFATASSFYVPVLIILILYWRIYQTARKRIRR---- | |
463 --RRGATARGGVGPPPVPAG---------------------------------GALVAGG | |
464 GSGGIAAAVVAV-----IGRPLPTISETTTTGFTNVSSNNTSPE--KQSCANGLEADPPT | |
465 TGYGAVAAAYYPSLVRRKPKEAADSKRERKAAKTLAIITGAFVACWLPFFVLAILVPT-C | |
466 DCE---VSPVLTSLSLWLGYFNSTLNPVIYTVFSPEFRHAFQ-RLLCGR--RVRRR-RA- | |
467 ---------------PQ------------------------------------------- | |
468 ----------------------------------------------------------- |