Mercurial > repos > nick > duplex
diff mafft/test/sample.lins1 @ 18:e4d75f9efb90 draft
planemo upload commit b'4303231da9e48b2719b4429a29b72421d24310f4\n'-dirty
| author | nick |
|---|---|
| date | Thu, 02 Feb 2017 18:44:31 -0500 |
| parents | |
| children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/mafft/test/sample.lins1 Thu Feb 02 18:44:31 2017 -0500 @@ -0,0 +1,468 @@ +> 1== M63632 1 Lampetra japonica rhodopsin <>[BBRC174,1125-1132'91] +-------------------------MNGTE--G-------------------DNFYVPFS +NKTG--------------------------------LARSPYEYPQY------------- +---YLAEPW---------KYSA-----LAAYMFFLILVGFPVNFLTLFVTVQHKKLRTPL +NYILLNLAMANLFMVLFG-FTVTMYTSMN-GYFV--FGPTMCSIEGFFATLGGEVALWSL +VVLAIERYIVICKPMGNF-RFGNTHAIMGVAFTWIMALAC-AAPPLV-GWS-----RYIP +EGMQCSCGPDYYTLNPNFNNESYVVYMFVVHFLVPFVIIFFCYGRLLCTVKEAAAAQQES +A----------------------------------------------------------- +------------------------------------------------------------ +----------------------STQKAEKEVTRMVVLMVIGFLVCWVPYASVAFYIFT-H +QGS--DFGATFMTLPAFFAKSSALYNPVIYILMNKQFRNCMITTLCC------GKNPLGD +DE-SG-ASTSK-TEVSSVS--TSPVSPA-------------------------------- +----------------------------------------------------------- +> 2== U22180 1 rat opsin <rod>[J.Mol.Neurosci.5(3),207-209'94] +-------------------------MNGTE--G-------------------PNFYVPFS +NITG--------------------------------VVRSPFEQPQY------------- +---YLAEPW---------QFSM-----LAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPL +NYILLNLAVADLFMVFGG-FTTTLYTSLH-GYFV--FGPTGCNLEGFFATLGGEIGLWSL +VVLAIERYVVVCKPMSNF-RFGENHAIMGVAFTWVMALAC-AAPPLV-GWS-----RYIP +EGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQES +A----------------------------------------------------------- +------------------------------------------------------------ +----------------------TTQKAEKEVTRMVIIMVIFFLICWLPYASVAMYIFT-H +QGS--NFGPIFMTLPAFFAKTASIYNPIIYIMMNKQFRNCMLTSLCC------GKNPLGD +DE-AS-ATASK-TETSQVA--PA------------------------------------- +----------------------------------------------------------- +> 3== M92038 1 chicken green sensitive cone opsin <retina>[PNAS89,5932-5936'9 +-------------------------MNGTE--G-------------------INFYVPMS +NKTG--------------------------------VVRSPFEYPQY------------- +---YLAEPW---------KYRL-----VCCYIFFLISTGLPINLLTLLVTFKHKKLRQPL +NYILVNLAVADLFMACFG-FTVTFYTAWN-GYFV--FGPVGCAVEGFFATLGGQVALWSL +VVLAIERYIVVCKPMGNF-RFSATHAMMGIAFTWVMAFSC-AAPPLF-GWS-----RYMP +EGMQCSCGPDYYTHNPDYHNESYVLYMFVIHFIIPVVVIFFSYGRLICKVREAAAQQQES +A----------------------------------------------------------- +------------------------------------------------------------ +----------------------TTQKAEKEVTRMVILMVLGFMLAWTPYAVVAFWIFT-N +KGA--DFTATLMAVPAFFSKSSSLYNPIIYVLMNKQFRNCMITTICC------GKNPFGD +EDVSSTVSQSK-TEVSSVS--SSQVSPA-------------------------------- +----------------------------------------------------------- +> 4=p A45229 opsin, green-sensitive (clone GFgr-1) - goldfish +-------------------------MNGTE--G-------------------KNFYVPMS +NRTG--------------------------------LVRSPFEYPQY------------- +---YLAEPW---------QFKI-----LALYLFFLMSMGLPINGLTLVVTAQHKKLRQPL +NFILVNLAVAGTIMVCFG-FTVTFYTAIN-GYFV--LGPTGCAVEGFMATLGGEVALWSL +VVLAIERYIVVCKPMGSF-KFSSSHAFAGIAFTWVMALAC-AAPPLF-GWS-----RYIP +EGMQCSCGPDYYTLNPDYNNESYVIYMFVCHFILPVAVIFFTYGRLVCTVKAAAAQQQDS +A----------------------------------------------------------- +------------------------------------------------------------ +----------------------STQKAEREVTKMVILMVFGFLIAWTPYATVAAWIFF-N +KGA--DFSAKFMAIPAFFSKSSALYNPVIYVLLNKQFRNCMLTTIFC------GKNPLGD +DE-SSTVSTSK-TEVSSVS--PA------------------------------------- +----------------------------------------------------------- +> 5=p B45229 opsin, green-sensitive (clone GFgr-2) - goldfish +-------------------------MNGTE--G-------------------NNFYVPLS +NRTG--------------------------------LVRSPFEYPQY------------- +---YLAEPW---------QFKL-----LAVYMFFLICLGLPINGLTLICTAQHKKLRQPL +NFILVNLAVAGAIMVCFG-FTVTFYTAIN-GYFA--LGPTGCAVEGFMATLGGEVALWSL +VVLAIERYIVVCKPMGSF-KFSSTHASAGIAFTWVMAMAC-AAPPLV-GWS-----RYIP +EGIQCSCGPDYYTLNPEYNNESYVLYMFICHFILPVTIIFFTYGRLVCTVKAAAAQQQDS +A----------------------------------------------------------- +------------------------------------------------------------ +----------------------STQKAEREVTKMVILMVLGFLVAWTPYATVAAWIFF-N +KGA--AFSAQFMAIPAFFSKTSALYNPVIYVLLNKQFRSCMLTTLFC------GKNPLGD +EE-SSTVSTSK-TEVSSVS--PA------------------------------------- +----------------------------------------------------------- +> 6== L11864 1 Carassius auratus blue cone opsin <retina>[Biochemistry32,208- +-------------------------MKQVPEFH-------------------EDFYIPIP +LDIN------------------------------NLSAYSPFLVPQD------------- +---HLGNQG---------IFMA-----MSVFMFFIFIGGASINILTILCTIQFKKLRSHL +NYILVNLSIANLFVAIFG-SPLSFYSFFN-RYFI--FGATACKIEGFLATLGGMVGLWSL +AVVAFERWLVICKPLGNF-TFKTPHAIAGCILPWISALAA-SLPPLF-GWS-----RYIP +EGLQCSCGPDWYTTNNKYNNESYVMFLFCFCFAVPFGTIVFCYGQLLITLKLAAKAQADS +A----------------------------------------------------------- +------------------------------------------------------------ +----------------------STQKAEREVTKMVVVMVLGFLVCWAPYASFSLWIVS-H +RGE--EFDLRMATIPSCLSKASTVYNPVIYVLMNKQFRSCMM-KMVC------GKN-IEE +DE-AS-TSSQV-TQVSSVA--PEK------------------------------------ +----------------------------------------------------------- +> 7== M13299 1 human BCP <>[Science232(4747),193-202'86] +-------------------------MRKMS--E-------------------EEFYL--- +--FK------------------------------NISSVGPWDGPQY------------- +---HIAPVW---------AFYL-----QAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPL +NYILVNVSFGGFLLCIFS-VFPVFVASCN-GYFV--FGRHVCALEGFLGTVAGLVTGWSL +AFLAFERYIVICKPFGNF-RFSSKHALTVVLATWTIGIGV-SIPPFF-GWS-----RFIP +EGLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQES +A----------------------------------------------------------- +------------------------------------------------------------ +----------------------TTQKAEREVSRMVVVMVGSFCVCYVPYAAFAMYMVN-N +RNH--GLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIM-KMVC------GKA-MTD +ES-DT-CSSQK-TEVSTVS--STQVGPN-------------------------------- +----------------------------------------------------------- +> 8=opsin, greensensitive human (fragment) S07060 +------------------------------------------------------------ +------------------------------------------------------------ +------------------------------------------------------------ +----------DLAETVIA-STISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSL +AIISWERWLVVCKPFGNV-RFDAKLAIVGIAFSWIWAAVW-TAPPIF-GWS-----RYWP +HGLKTSCGPDVFSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAIRAVAKQQKES +E----------------------------------------------------------- +------------------------------------------------------------ +----------------------STQKAEKEVTRMVVVMVLAFC----------------- +------------------------------------------------------------ +------------------------------------------------------------ +----------------------------------------------------------- +> 9== K03494 1 human GCP <>[Science232(4747),193-202'86] +MAQQWS-LQRLAGRHPQDS-----YEDSTQ--S-------------------SIFTYTNS +N-----------------------------------STRGPFEGPNY------------- +---HIAPRW---------VYHL-----TSVWMIFVVIASVFTNGLVLAATMKFKKLRHPL +NWILVNLAVADLAETVIA-STISVVNQVY-GYFV--LGHPMCVLEGYTVSLCGITGLWSL +AIISWERWMVVCKPFGNV-RFDAKLAIVGIAFSWIWAAVW-TAPPIF-GWS-----RYWP +HGLKTSCGPDVFSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAIRAVAKQQKES +E----------------------------------------------------------- +------------------------------------------------------------ +----------------------STQKAEKEVTRMVVVMVLAFCFCWGPYAFFACFAAA-N +PGY--PFHPLMAALPAFFAKSATIYNPVIYVFMNRQFRNCIL-QLF-------GKK-VDD +GS-EL-SSASK-TEVSSV----SSVSPA-------------------------------- +----------------------------------------------------------- +> 10== Z68193 1 human Red Opsin <>[] +MAQQWS-LQRLAGRHPQDS-----YEDSTQ--S-------------------SIFTYTNS +N-----------------------------------STRGPFEGPNY------------- +---HIAPRW---------VYHL-----TSVWMIFVVTASVFTNGLVLAATMKFKKLRHPL +NWILVNLAVADLAETVIA-STISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSL +AIISWERWLVVCKPFGNV-RFDAKLAIVGIAFSWIWSAVW-TAPPIF-GWS-----RYWP +HGLKTSCGPDVFSGSSYPGVQSYMIVLMVTCCIIPLAIIMLCYLQVWLAIRAVAKQQKES +E----------------------------------------------------------- +------------------------------------------------------------ +----------------------STQKAEKEVTRMVVVMIFAYCVCWGPYTFFACFAAA-N +PGY--AFHPLMAALPAYFAKSATIYNPVIYVFMNRQFRNCIL-QLF-------GKK-VDD +GS-EL-SSASK-TEVSSV----SSVSPA-------------------------------- +----------------------------------------------------------- +> 11== M92036 1 Gecko gecko P521 <retina>[PNAS89,6841-6845'92] +MTEAWNVAVFAARRSRDD-------DDTTR--G-------------------SVFTYTNT +N-----------------------------------NTRGPFEGPNY------------- +---HIAPRW---------VYNL-----VSFFMIIVVIASCFTNGLVLVATAKFKKLRHPL +NWILVNLAFVDLVETLVA-STISVFNQIF-GYFI--LGHPLCVIEGYVVSSCGITGLWSL +AIISWERWFVVCKPFGNI-KFDSKLAIIGIVFSWVWAWGW-SAPPIF-GWS-----RYWP +HGLKTSCGPDVFSGSVELGCQSFMLTLMITCCFLPLFIIIVCYLQVWMAIRAVAAQQKES +E----------------------------------------------------------- +------------------------------------------------------------ +----------------------STQKAEREVSRMVVVMIVAFCICWGPYASFVSFAAA-N +PGY--AFHPLAAALPAYFAKSATIYNPVIYVFMNRQFRNCIM-QLF-------GKK-VDD +GS-EA-STTSR-TEVSSVS--NSSVAPA-------------------------------- +----------------------------------------------------------- +> 12== M62903 1 chicken visual pigment <>[BBRC173,1212-1217'90] +MA-AWE-AAFAARRRHEE-------EDTTR--D-------------------SVFTYTNS +N-----------------------------------NTRGPFEGPNY------------- +---HIAPRW---------VYNL-----TSVWMIFVVAASVFTNGLVLVATWKFKKLRHPL +NWILVNLAVADLGETVIA-STISVINQIS-GYFI--LGHPMCVVEGYTVSACGITALWSL +AIISWERWFVVCKPFGNI-KFDGKLAVAGILFSWLWSCAW-TAPPIF-GWS-----RYWP +HGLKTSCGPDVFSGSSDPGVQSYMVVLMVTCCFFPLAIIILCYLQVWLAIRAVAAQQKES +E----------------------------------------------------------- +------------------------------------------------------------ +----------------------STQKAEKEVSRMVVVMIVAYCFCWGPYTFFACFAAA-N +PGY--AFHPLAAALPAYFAKSATIYNPIIYVFMNRQFRNCIL-QLF-------GKK-VDD +GS-EV-ST-SR-TEVSSVS--NSSVSPA-------------------------------- +----------------------------------------------------------- +> 13== S75720 1 chicken P-opsin <>[Science267(5203),1502-1506'95] +-----------------------------M--S-------------------SNSSQAPP +N-----------------------------------GTPGPFDGPQW------------- +--PYQAPQS---------TYVG-----VAVLMGTVVACASVVNGLVIVVSICYKKLRSPL +NYILVNLAVADLLVTLCG-SSVSLSNNIN-GFFV--FGRRMCELEGFMVSLTGIVGLWSL +AILALERYVVVCKPLGDF-QFQRRHAVSGCAFTWGWALLW-SAPPLL-GWS-----SYVP +EGLRTSCGPNWYTGGSN--NNSYILSLFVTCFVLPLSLILFSYTNLLLTLRAAAAQQKEA +D----------------------------------------------------------- +------------------------------------------------------------ +----------------------TTQRAEREVTRMVIVMVMAFLLCWLPYSTFALVVAT-H +KGI--IIQPVLASLPSYFSKTATVYNPIIYVFMNKQFQSCLL-EMLCCG--YQPQR-TGK +AS-PG-TPGPH-ADVTAAG-LRNKVMPAHPV----------------------------- +----------------------------------------------------------- +> 14== M17718 1 D.melanogaster Rh3 <>[J.Neurosci.7,1550-1557'87] +----------------MESGNVSSSLFGNV--S-------------------TALR---- +---P--------------------------------EARLSA---E---TRLLGWNVPPE +ELRHIPEHWLTYPEPPESMNYL-----LGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPS +NILVINLAFCDFMMM-VK-TPIFIYNSFH-QGYA--LGHLGCQIFGIIGSYTGIAAGATN +AFIAYDRFNVITRPMEG--KMTHGKAIAMIIFIYMYATPW-VVACYTETWG-----RFVP +EGYLTSCTFDYLTDN--FDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKALRDQ +AKKM------------------NVESLRS------------------------------- +------------------------------------------------------------ +------------------NVDKNKETAEIRIAKAAITICFLFFCSWTPYGVMSLIGAF-G +DKT--LLTPGATMIPACACKMVACIDPFVYAISHPRYRMELQ-KRCPWL--ALNEK-APE +SS-AV-ASTST-TQEPQQT----TAA---------------------------------- +----------------------------------------------------------- +> 15== X65879 1 Drosophila pseudoobscura Dpse\Rh3 <>[Genetics132(1),193-204'92 +----------------MEYHNVSSVL-GNV--S-------------------SVLR---- +---P--------------------------------DARLSA---E---SRLLGWNVPPD +ELRHIPEHWLIYPEPPESMNYL-----LGTLYIFFTVISMIGNGLVMWVFSAAKSLRTPS +NILVINLAFCDFMMM-IK-TPIFIYNSFH-QGYA--LGHLGCQIFGVIGSYTGIAAGATN +AFIAYDRYNVITRPMEG--KMTHGKAIAMIIFIYLYATPW-VVACYTESWG-----RFVP +EGYLTSCTFDYLTDN--FDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKALRDQ +AKKM------------------NVDSLRS------------------------------- +------------------------------------------------------------ +------------------NVDKSKEAAEIRIAKAAITICFLFFASWTPYGVMSLIGAF-G +DKT--LLTPGATMIPACTCKMVACIDPFVYAISHPRYRMELQ-KRCPWL--AISEK-APE +SR-AA-ISTST-TQEQQQT----TAA---------------------------------- +----------------------------------------------------------- +> 16== M17730 1 D.melanogaster Rh4 opsin <>[J.Neurosci.7,1558-1566'87] +----------------------MEPLCNAS--E-------------------PPLR---- +---P--------------------------------EAR-SSGNGD---LQFLGWNVPPD +QIQYIPEHWLTQLEPPASMHYM-----LGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPS +NMFVLNLAVFDLIMC-LK-APIF--NSFH-RGFAIYLGNTWCQIFASIGSYSGIGAGMTN +AAIGYDRYNVITKPMNR--NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFWD-----RFVP +EGYLTSCSFDYLSDN--FDTRLFVGTIFFFSFVCPTLMILYYYSQIVGHVFSHEKALREQ +AKKM------------------NVESLRS------------------------------- +------------------------------------------------------------ +------------------NVDKSKETAEIRIAKAAITICFLFFVSWTPYGVMSLIGAF-G +DKS--LLTQGATMIPACTCKLVACIDPFVYAISHPRYRLELQ-KRCPWL--GVNEK-SGE +IS-SA-QSTTT-QEQQQTT----AA----------------------------------- +----------------------------------------------------------- +> 17== X65880 1 Drosophila pseudoobscura Dpse\Rh4 <>[Genetics132(1),193-204'92 +----------------------MDALCNAS--E-------------------PPLR---- +---P--------------------------------EARMSSGSDE---LQFLGWNVPPD +QIQYIPEHWLTQLEPPASMHYM-----LGVFYIFLFFASTLGNGMVIWIFSTSKSLRTPS +NMFVLNLAVFDLIMC-LK-APIFIYNSFH-RGFA--LGNTWCQIFASIGSYSGIGAGMTN +AAIGYDRYNVITKPMNR--NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFWD-----RFVP +EGYLTSCSFDYLSDN--FDTRLFVGTIFLFSFVVPTLMILYYYSQIVGHVFNHEKALREQ +AKKM------------------NVESLRS------------------------------- +------------------------------------------------------------ +------------------NVDKSKETAEIRIAKAAITICFLFFVSWTPYGVMSLIGAF-G +DKS--LLTPGATMIPACTCKLVACIEPFVYAISHPRYRMELQ-KRCPWL--GVNEK-SGE +AS-SA-QSTTT-QEQTQQT----SAA---------------------------------- +----------------------------------------------------------- +> 18== D50584 1 Hemigrapsus sanguineus opsin BcRh2 <compound eye>[J.Exp.Biol.1 +-------------------------MTNAT--G-------------------PQMAY--- +--YG--------------------------------AASMDFGYPE---GVSIVDFVRPE +IKPYVHQHWYNYPPVNPMWHYL-----LGVIYLFLGTVSIFGNGLVIYLFNKSAALRTPA +NILVVNLALSDLIMLTTN-VPFFTYNCFSGGVWM--FSPQYCEIYACLGAITGVCSIWLL +CMISFDRYNIICNGFNGP-KLTTGKAVVFALISWVIAIGC-ALPPFF-GWG-----NYIL +EGILDSCSYDYLTQD--FNTFSYNIFIFVFDYFLPAAIIVFSYVFIVKAIFAHEAAMRAQ +AKKM------------------NVSTLRS------------------------------- +------------------------------------------------------------ +-------------------NEADAQRAEIRIAKTALVNVSLWFICWTPYALISLKGVM-G +DTS--GITPLVSTLPALLAKSCSCYNPFVYAISHPKYRLAIT-QHLPWF--CVHET-ETK +SN-DD-SQSNS-TVAQDKA----------------------------------------- +----------------------------------------------------------- +> 19== D50583 1 Hemigrapsus sanguineus opsin BcRh1 <compound eye>[J.Exp.Biol.1 +-------------------------MANVT--G-------------------PQMAF--- +--YG--------------------------------SGAATFGYPE---GMTVADFVPDR +VKHMVLDHWYNYPPVNPMWHYL-----LGVVYLFLGVISIAGNGLVIYLYMKSQALKTPA +NMLIVNLALSDLIMLTTN-FPPFCYNCFSGGRWM--FSGTYCEIYAALGAITGVCSIWTL +CMISFDRYNIICNGFNGP-KLTQGKATFMCGLAWVISVGW-SLPPFF-GWG-----SYTL +EGILDSCSYDYFTRD--MNTITYNICIFIFDFFLPASVIVFSYVFIVKAIFAHEAAMRAQ +AKKM------------------NVTNLRS------------------------------- +------------------------------------------------------------ +-------------------NEAETQRAEIRIAKTALVNVSLWFICWTPYAAITIQGLL-G +NAE--GITPLLTTLPALLAKSCSCYNPFVYAISHPKFRLAIT-QHLPWF--CVHEK-DPN +DV-EE-NQSSN-TQTQEKS----------------------------------------- +----------------------------------------------------------- +> 20== K02320 1 D.melanogaster opsin <>[Cell40,851-858'85] +----------------MES---FAVAAAQL--G-------------------PHFA---- +--------------------------------------PLS--------NGSVVDKVTPD +MAHLISPYWNQFPAMDPIWAKI-----LTAYMIMIGMISWCGNGVVIYIFATTKSLRTPA +NLLVINLAISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSM +CMISLDRYQVIVKGMAGR-PMTIPLALGKM---------------------------YVP +EGNLTSCGIDYLERD--WNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQ +AKKM------------------NVKSLRS------------------------------- +------------------------------------------------------------ +-------------------SEDAEKSAEGKLAKVALVTITLWFMAWTPYLVINCMGLF-K +F-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALK-EKCPCC--VFGKV-DDG +KS-SD-AQSQA-TASEAES----KA----------------------------------- +----------------------------------------------------------- +> 21== K02315 1 D.melanogaster ninaE <>[Cell40,839-850'85] +----------------MES---FAVAAAQL--G-------------------PHFA---- +--------------------------------------PLS--------NGSVVDKVTPD +MAHLISPYWNQFPAMDPIWAKI-----LTAYMIMIGMISWCGNGVVIYIFATTKSLRTPA +NLLVINLAISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSM +CMISLDRYQVIVKGMAGR-PMTIPLALGKIAYIWFMSSIW-CLAPAF-GWS-----RYVP +EGNLTSCGIDYLERD--WNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQ +AKKM------------------NVKSLRS------------------------------- +------------------------------------------------------------ +-------------------SEDAEKSAEGKLAKVALVTITLWFMAWTPYLVINCMGLF-K +F-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALK-EKCPCC--VFGKV-DDG +KS-SD-AQSQA-TASEAES----KA----------------------------------- +----------------------------------------------------------- +> 22== X65877 1 Drosophila pseudoobscura Dpse\ninaE <>[Genetics132(1),193-204' +----------------MDS---FAAVATQL--G-------------------PQFA---- +--------------------------------------APS--------NGSVVDKVTPD +MAHLISPYWDQFPAMDPIWAKI-----LTAYMIIIGMISWCGNGVVIYIFATTKSLRTPA +NLLVINLAISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSM +CMISLDRYQVIVKGMAGR-PMTIPLALGKIAYIWFMSTIWCCLAPVF-GWS-----RYVP +EGNLTSCGIDYLERD--WNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQ +AKKM------------------NVKSLRS------------------------------- +------------------------------------------------------------ +-------------------SEDADKSAEGKLAKVALVTISLWFMAWTPYLVINCMGLF-K +F-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALK-EKCPCC--VFGKV-DDG +KS-SE-AQSQA-TTSEAES----KA----------------------------------- +----------------------------------------------------------- +> 23== M12896 1 D.melanogaster Rh2 <>[Cell44,705-710'86] +-----------MERSHLPE---TPFDLAHS--G-------------------PRFQ---- +--------------------------------------AQSSG------NGSVLDNVLPD +MAHLVNPYWSRFAPMDPMMSKI-----LGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPA +NLLVLNLAFSDFCMMASQ-SPVMIINFYY-ETWV--LGPLWCDIYAGCGSLFGCVSIWSM +CMIAFDRYNVIVKGINGT-PMTIKTSIMKILFIWMMAVFW-TVMPLI-GWS-----AYVP +EGNLTACSIDYMTRM--WNPRSYLITYSLFVYYTPLFLICYSYWFIIAAVAAHEKAMREQ +AKKM------------------NVKSLRS------------------------------- +------------------------------------------------------------ +-------------------SEDCDKSAEGKLAKVALTTISLWFMAWTPYLVICYFGLF-K +I-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIVLK-EKCPMC--VFGNT-DEP +KP-DA-PASDTETTSEADS----KA----------------------------------- +----------------------------------------------------------- +> 24== X65878 1 Drosophila pseudoobscura Dpse\Rh2 <>[Genetics132(1),193-204'92 +-----------MERSLLPE---PPLAMALL--G-------------------PRFE---- +--------------------------------------AQTGG------NRSVLDNVLPD +MAPLVNPHWSRFAPMDPTMSKI-----LGLFTLVILIISCCGNGVVVYIFGGTKSLRTPA +NLLVLNLAFSDFCMMASQ-SPVMIINFYY-ETWV--LGPLWCDIYAACGSLFGCVSIWSM +CMIAFDRYNVIVKGINGT-PMTIKTSIMKIAFIWMMAVFW-TIMPLI-GWS-----SYVP +EGNLTACSIDYMTRQ--WNPRSYLITYSLFVYYTPLFMICYSYWFIIATVAAHEKAMRDQ +AKKM------------------NVKSLRS------------------------------- +------------------------------------------------------------ +-------------------SEDCDKSAENKLAKVALTTISLWFMAWTPYLIICYFGLF-K +I-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPNDRLVLK-EKCPMC--VCGTT-DEP +KP-DA-PPSDTETTSEAES----KD----------------------------------- +----------------------------------------------------------- +> 25== U26026 1 Apis mellifera long-wavelength rhodopsin <>[] +-------------------------MIAVS--G-------------------PSYE---- +--------------------------------------AFSYGGQARFNNQTVVDKVPPD +MLHLIDANWYQYPPLNPMWHGI-----LGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPS +NLFVINLAISNFLMMFCM-SPPMVINCYY-ETWV--LGPLFCQIYAMLGSLFGCGSIWTM +TMIAFDRYNVIVKGLSGK-PLSINGALIRIIAIWLFSLGW-TIAPMF-GWN-----RYVP +EGNMTACGTDYFNRG--LLSASYLVCYGIWVYFVPLFLIIYSYWFIIQAVAAHEKNMREQ +AKKM------------------NVASLRS------------------------------- +------------------------------------------------------------ +-------------------SENQNTSAECKLAKVALMTISLWFMAWTPYLVINFSGIF-N +L-V--KISPLFTIWGSLFAKANAVYNPIVYGISHPKYRAALF-AKFPSL--AC-AA-EPS +SD-AV-STTSG-TTTVTDN----EKSNA-------------------------------- +----------------------------------------------------------- +> 26== L03781 1 Limulus polyphemus opsin <>[PNAS90,6150-6154'93] +---------------------------MAN--Q-------------------LSYS---- +--------------------------------------SLGWPYQP---NASVVDTMPKE +MLYMIHEHWYAFPPMNPLWYSI-----LGVAMIILGIICVLGNGMVIYLMMTTKSLRTPT +NLLVVNLAFSDFCMMAFM-MPTMTSNCFA-ETWI--LGPFMCEVYGMAGSLFGCASIWSM +VMITLDRYNVIVRGMAAA-PLTHKKATLLLLFVWIWSGGW-TILPFF-GWS-----RYVP +EGNLTSCTVDYLTKD--WSSASYVVIYGLAVYFLPLITMIYCYFFIVHAVAEHEKQLREQ +AKKM------------------NVASLRA------------------------------- +------------------------------------------------------------ +------------------NADQQKQSAECRLAKVAMMTVGLWFMAWTPYLIISWAGVF-S +SGT--RLTPLATIWGSVFAKANSCYNPIVYGISHPRYKAALY-QRFPSL--ACGSG-ESG +SD-VK-SEASA-TTTMEEK----PKIPEA------------------------------- +----------------------------------------------------------- +> 27== X07797 1 Octopus dofleini rhodopsin <>[FEBS232(1),69-72'88] +---------------------------MVE--S-------------------TTLV---- +--------------------------------------NQTWWY-----NPTV------- +---DIHPHWAKFDPIPDAVYYS-----VGIFIGVVGIIGILGNGVVIYLFSKTKSLQTPA +NMFIINLAMSDLSFSAINGFPLKTISAFM-KKWI--FGKVACQLYGLLGGIFGFMSINTM +AMISIDRYNVIGRPMAASKKMSHRRAFLMIIFVWMWSIVW-SVGPVF-NWG-----AYVP +EGILTSCSFDYLSTD--PSTRSFILCMYFCGFMLPIIIIAFCYFNIVMSVSNHEKEMAAM +AKRL------------------NAKELRK------------------------------- +------------------------------------------------------------ +-------------------AQ-AGASAEMKLAKISMVIITQFMLSWSPYAIIALLAQF-G +PAE--WVTPYAAELPVLFAKASAIHNPIVYSVSHPKFREAIQ-TTFPWLLTCCQFD-EKE +CE-DA-NDAEE-EVVASER--GGESRDAAQMKEMMAMMQKMQAQQAAYQP---PPPPQGY +PPQGYPPQGAYPPPQGYPPQGYPPQGYPPQGYPPQGAPPQVEAPQGAPPQGVDNQAYQA +> 28== X70498 1 Todarodes pacificus rhodopsin <retina>[FEBS317(1-2),5-11'93] +----------------------------MG--R-------------------DLRD---- +--------------------------------------NETWWY-----NPSI------- +---VVHPHWREFDQVPDAVYYS-----LGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPA +NMFIINLAFSDFTFSLVNGFPLMTISCFL-KKWI--FGFAACKVYGFIGGIFGFMSIMTM +AMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLW-AIGPIF-GWG-----AYTL +EGVLCNCSFDYISRD--STTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAM +AKRL------------------NAKELRK------------------------------- +------------------------------------------------------------ +-------------------AQ-AGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQF-G +PLE--WVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAIS-QTFPWVLTCCQFD-DKE +TE-DD-KDAET-EIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGY +PPQGYPPQGY--PPQGYPPQGYPP---PPQGAPPQGAPP------AAPPQGVDNQAYQA +> 29== L21195 1 human serotonin 5-HT7 receptor protein <placenta and fetal bra +------------------------MMDVNS-SG----RPDLYGHLRSFLLPEVGRGLPDL +SPDG------------GADPVAGSWAPHLLS---EVTASPA---PTW--DA------PPD +NASGCGEQ----INYGRVEKVV-----IGSILTLITLLTIAGNCLVVISVCFVKKLRQPS +NYLIVSLALADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTL +CVISIDRYLGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLF-GWA-----QNVN +DDKVCLISQDF----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF- +-------------PGFPRVEPDSVIALNG------------------------------- +---------------------IVKLQKE------------------VEECAN-------- +----------LSRLLKHERKNISIFKREQKAATTLGIIVGAFTVCWLPFFLLSTARPFIC +GTSCSCIPLWVERTFLWLGYANSLINPFIYAFFNRDLRTTYR-SLLQCQ--YRNIN-RKL +SA-AGMHEALKLAERPERPEFVLQNADYCRKK---------------------------- +--------------------------------------------------GHDS----- +> 30== L15228 1 rat 5HT-7 serotonin receptor <>[JBC268,18200-18204'93] +------------------------------------------------------------ +-------------------------MPHLLSGFLEVTASPA---PTW--DA------PPD +NVSGCGEQ----INYGRVEKVV-----IGSILTLITLLTIAGNCLVVISVSFVKKLRQPS +NYLIVSLALADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTL +CVISIDRYLGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLF-GWA-----QNVN +DDKVCLISQDF----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF- +-------------PGFPRVQPESVISLNG------------------------------- +---------------------VVKLQKE------------------VEECAN-------- +----------LSRLLKHERKNISIFKREQKAATTLGIIVGAFTVCWLPFFLLSTARPFIC +GTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRPTSR-SLLQCQ--YRNIN-RKL +SA-AGMHEALKLAERPERSEFVLQNSDHCGKK---------------------------- +--------------------------------------------------GHDT----- +> 31=p A47425 serotonin receptor 5HT-7 - rat +------------------------------------------------------------ +-------------------------MPHLLSGFLEVTASPA---PTW--DA------PPD +NVSGCGEQ----INYGRVEKVV-----IGSILTLITLLTIAGNCLVVISVSFVKKLRQPS +NYLIVSLALADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTL +CVISIDRYLGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLF-GWA-----QNVN +DDKVCLISQDF----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF- +-------------PGFPRVQPESVISLNG------------------------------- +---------------------VVKLQKE------------------VEECAN-------- +----------LSRLLKHERKNISIFKREQKAATTLGIIVGAFTVCWLPFFLLSTARPFIC +GTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRTTYR-SLLQCQ--YRNIN-RKL +SA-AGMHEALKLAERPERSEFVLQNSDHCGKK---------------------------- +--------------------------------------------------GHDT----- +> 32== M83181 1 human serotonin receptor <>[JBC267(11),7553-7562'92] +-------------------------MDVLS-PG--------------------------- +------------------------------------QGNNT--------TSPPAPFETGG +NTTGIS-------DVTVSYQVI-----TSLLLGTLIFCAVLGNACVVAAIALERSLQNVA +NYLIGSLAVTDLMVSVLV-LPMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHL +CAIALDRYWAITDPIDYVNKRTPRRAAALISLTWLIGFLI-SIPPML-GWRTPEDRSDPD +---ACTISKDH----------GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRKTVKK +VEKTGADTRHGASPAPQPKK-----SVNG--ESGSRNWRLGVESKAGGALCANGAVRQGD +DGAAL--EVIEVHRVGNSKEHLPLPSEAGPTPCAPAS------------------FERKN +ERNA-------------EAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-C +ESSC-HMPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFK-KIIKCK--FCRQ----- +------------------------------------------------------------ +----------------------------------------------------------- +> 33=p A35181 serotonin receptor class 1A - rat +-------------------------MDVFS-FG--------------------------- +------------------------------------QGNNT--------TASQEPFGTGG +NVTSIS-------DVTFSYQVI-----TSLLLGTLIFCAVLGNACVVAAIALERSLQNVA +NYLIGSLAVTDLMVSVLV-LPMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHL +CAIALDRYWAITDPIDYVNKRTPRRAAALISLTWLIGFLI-SIPPML-GWRTPEDRSDPD +---ACTISKDH----------GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRKTVRK +VEKKGAGTSLGTSSAPPPKK-----SLNG--QPGSGDWRRCAENRAVGTPCTNGAVRQGD +DEATL--EVIEVHRVGNSKEHLPLPSESGSNSYAPAC------------------LERKN +ERNA-------------EAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-C +ESSC-HMPALLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFK-KIIKCK--FCRR----- +------------------------------------------------------------ +----------------------------------------------------------- +> 34== L06803 1 Lymnaea stagnalis serotonin receptor <>[PNAS90,11-15'93] +---------------MANFTFGDLALDVAR-MGGLASTPS---GLRS-----TGLTTPGL +SPTGLVTSDFNDSYGLTGQFINGSHSSRSRD---NASANDT--------SATNM---TDD +RYWSLT-------VYSHEHLVL-----TSVILGLFVLCCIIGNCFVIAAVMLERSLHNVA +NYLILSLAVADLMVAVLV-MPLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHL +VAIAMDRYWAVTS-IDYIRRRSARRILLMIMVVWIVALFI-SIPPLF-GWRDPNN--DPD +KTGTCIISQDK----------GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQ +MTKARLKTEETTLVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKN +RAKKLPENANGVNSNSSSSERLKQIQIETAEAFANGCAEEASIAMLERQCNNGKKISSND +TPYS-------------RTREKLELKRERKAARTLAIITGAFLICWLPFFIIALIGPF-V +DPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQ-KILFGK--YRRGH-R-- +------------------------------------------------------------ +----------------------------------------------------------- +> 35=p A47174 serotonin receptor, 5HTlym receptor - great pond snail +---------------MANFTFGDLALDVAR-MGGLASTPS---GLRS-----TGLTTPGL +SPTGLVTSDFNDSYGLTGQFINGSHSSRSRD---NASANDT--------SATNM---TDD +RYWSLT-------VYSHEHLVL-----TSVILGLFVLCCIIGNCFVIAAVMLERSLHNVA +NYLILSLAVADLMVAVLV-MPLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHL +VAIAMDRYWAVTS-IDYIRRRSARRILLMIMVVWIVALFI-SIPPLF-GWRDPNN--DPD +KTGTCIISQDK----------GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQ +MTKARLKTEETTLVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKN +RAKKLPENANGVNSNSSSSERLKQIQIETAEAFANGCAEEASIAMLERQCNNGKKISSND +TPYS-------------RTREKLELKRERKAARTLAIITGAFLICWLPFFIIALIGPF-V +DPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQ-KILFGK--YRRGH-R-- +------------------------------------------------------------ +----------------------------------------------------------- +> 36== X95604 1 Bombyx mori serotonin receptor <antennae>[InsectBiochem.Mol.Bi +----------------MEGAEGQEELDWEA-LY---------------------LRLP-- +-----------------------------LQ---NCSWNSTGWEPNW--NVTVV---PNT +TWWQAS-------APFDTPAALVRAAAKAVVLGLLILATVVGNVFVIAAILLERHLRSAA +NNLILSLAVADLLVACLV-MPLGAVYEVV-QRWT--LGPELCDMWTSGDVLCCTASILHL +VAIALDRYWAVTN-IDYIHASTAKRVGMMIACVWTVSFFV-CIAQLL-GWKDPDWNQRVS +EDLRCVVSQDV----------GYQIFATASSFYVPVLIILILYWRIYQTARKRIRR---- +--RRGATARGGVGPPPVPAG---------------------------------GALVAGG +GSGGIAAAVVAV-----IGRPLPTISETTTTGFTNVSSNNTSPE--KQSCANGLEADPPT +TGYGAVAAAYYPSLVRRKPKEAADSKRERKAAKTLAIITGAFVACWLPFFVLAILVPT-C +DCE---VSPVLTSLSLWLGYFNSTLNPVIYTVFSPEFRHAFQ-RLLCGR--RVRRR-RA- +---------------PQ------------------------------------------- +-----------------------------------------------------------