view mafft/test/sample.lins1 @ 18:e4d75f9efb90 draft

planemo upload commit b'4303231da9e48b2719b4429a29b72421d24310f4\n'-dirty

>     1== M63632   1 Lampetra japonica rhodopsin <>[BBRC174,1125-1132'91]
-------------------------MNGTE--G-------------------DNFYVPFS
NKTG--------------------------------LARSPYEYPQY-------------
---YLAEPW---------KYSA-----LAAYMFFLILVGFPVNFLTLFVTVQHKKLRTPL
NYILLNLAMANLFMVLFG-FTVTMYTSMN-GYFV--FGPTMCSIEGFFATLGGEVALWSL
VVLAIERYIVICKPMGNF-RFGNTHAIMGVAFTWIMALAC-AAPPLV-GWS-----RYIP
EGMQCSCGPDYYTLNPNFNNESYVVYMFVVHFLVPFVIIFFCYGRLLCTVKEAAAAQQES
A-----------------------------------------------------------
------------------------------------------------------------
----------------------STQKAEKEVTRMVVLMVIGFLVCWVPYASVAFYIFT-H
QGS--DFGATFMTLPAFFAKSSALYNPVIYILMNKQFRNCMITTLCC------GKNPLGD
DE-SG-ASTSK-TEVSSVS--TSPVSPA--------------------------------
-----------------------------------------------------------
>     2== U22180   1 rat opsin <rod>[J.Mol.Neurosci.5(3),207-209'94]
-------------------------MNGTE--G-------------------PNFYVPFS
NITG--------------------------------VVRSPFEQPQY-------------
---YLAEPW---------QFSM-----LAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPL
NYILLNLAVADLFMVFGG-FTTTLYTSLH-GYFV--FGPTGCNLEGFFATLGGEIGLWSL
VVLAIERYVVVCKPMSNF-RFGENHAIMGVAFTWVMALAC-AAPPLV-GWS-----RYIP
EGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQES
A-----------------------------------------------------------
------------------------------------------------------------
----------------------TTQKAEKEVTRMVIIMVIFFLICWLPYASVAMYIFT-H
QGS--NFGPIFMTLPAFFAKTASIYNPIIYIMMNKQFRNCMLTSLCC------GKNPLGD
DE-AS-ATASK-TETSQVA--PA-------------------------------------
-----------------------------------------------------------
>     3== M92038   1 chicken green sensitive cone opsin <retina>[PNAS89,5932-5936'9
-------------------------MNGTE--G-------------------INFYVPMS
NKTG--------------------------------VVRSPFEYPQY-------------
---YLAEPW---------KYRL-----VCCYIFFLISTGLPINLLTLLVTFKHKKLRQPL
NYILVNLAVADLFMACFG-FTVTFYTAWN-GYFV--FGPVGCAVEGFFATLGGQVALWSL
VVLAIERYIVVCKPMGNF-RFSATHAMMGIAFTWVMAFSC-AAPPLF-GWS-----RYMP
EGMQCSCGPDYYTHNPDYHNESYVLYMFVIHFIIPVVVIFFSYGRLICKVREAAAQQQES
A-----------------------------------------------------------
------------------------------------------------------------
----------------------TTQKAEKEVTRMVILMVLGFMLAWTPYAVVAFWIFT-N
KGA--DFTATLMAVPAFFSKSSSLYNPIIYVLMNKQFRNCMITTICC------GKNPFGD
EDVSSTVSQSK-TEVSSVS--SSQVSPA--------------------------------
-----------------------------------------------------------
>     4=p A45229 opsin, green-sensitive (clone GFgr-1) - goldfish
-------------------------MNGTE--G-------------------KNFYVPMS
NRTG--------------------------------LVRSPFEYPQY-------------
---YLAEPW---------QFKI-----LALYLFFLMSMGLPINGLTLVVTAQHKKLRQPL
NFILVNLAVAGTIMVCFG-FTVTFYTAIN-GYFV--LGPTGCAVEGFMATLGGEVALWSL
VVLAIERYIVVCKPMGSF-KFSSSHAFAGIAFTWVMALAC-AAPPLF-GWS-----RYIP
EGMQCSCGPDYYTLNPDYNNESYVIYMFVCHFILPVAVIFFTYGRLVCTVKAAAAQQQDS
A-----------------------------------------------------------
------------------------------------------------------------
----------------------STQKAEREVTKMVILMVFGFLIAWTPYATVAAWIFF-N
KGA--DFSAKFMAIPAFFSKSSALYNPVIYVLLNKQFRNCMLTTIFC------GKNPLGD
DE-SSTVSTSK-TEVSSVS--PA-------------------------------------
-----------------------------------------------------------
>     5=p B45229 opsin, green-sensitive (clone GFgr-2) - goldfish
-------------------------MNGTE--G-------------------NNFYVPLS
NRTG--------------------------------LVRSPFEYPQY-------------
---YLAEPW---------QFKL-----LAVYMFFLICLGLPINGLTLICTAQHKKLRQPL
NFILVNLAVAGAIMVCFG-FTVTFYTAIN-GYFA--LGPTGCAVEGFMATLGGEVALWSL
VVLAIERYIVVCKPMGSF-KFSSTHASAGIAFTWVMAMAC-AAPPLV-GWS-----RYIP
EGIQCSCGPDYYTLNPEYNNESYVLYMFICHFILPVTIIFFTYGRLVCTVKAAAAQQQDS
A-----------------------------------------------------------
------------------------------------------------------------
----------------------STQKAEREVTKMVILMVLGFLVAWTPYATVAAWIFF-N
KGA--AFSAQFMAIPAFFSKTSALYNPVIYVLLNKQFRSCMLTTLFC------GKNPLGD
EE-SSTVSTSK-TEVSSVS--PA-------------------------------------
-----------------------------------------------------------
>     6== L11864   1 Carassius auratus blue cone opsin <retina>[Biochemistry32,208-
-------------------------MKQVPEFH-------------------EDFYIPIP
LDIN------------------------------NLSAYSPFLVPQD-------------
---HLGNQG---------IFMA-----MSVFMFFIFIGGASINILTILCTIQFKKLRSHL
NYILVNLSIANLFVAIFG-SPLSFYSFFN-RYFI--FGATACKIEGFLATLGGMVGLWSL
AVVAFERWLVICKPLGNF-TFKTPHAIAGCILPWISALAA-SLPPLF-GWS-----RYIP
EGLQCSCGPDWYTTNNKYNNESYVMFLFCFCFAVPFGTIVFCYGQLLITLKLAAKAQADS
A-----------------------------------------------------------
------------------------------------------------------------
----------------------STQKAEREVTKMVVVMVLGFLVCWAPYASFSLWIVS-H
RGE--EFDLRMATIPSCLSKASTVYNPVIYVLMNKQFRSCMM-KMVC------GKN-IEE
DE-AS-TSSQV-TQVSSVA--PEK------------------------------------
-----------------------------------------------------------
>     7== M13299   1 human BCP <>[Science232(4747),193-202'86]
-------------------------MRKMS--E-------------------EEFYL---
--FK------------------------------NISSVGPWDGPQY-------------
---HIAPVW---------AFYL-----QAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPL
NYILVNVSFGGFLLCIFS-VFPVFVASCN-GYFV--FGRHVCALEGFLGTVAGLVTGWSL
AFLAFERYIVICKPFGNF-RFSSKHALTVVLATWTIGIGV-SIPPFF-GWS-----RFIP
EGLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQES
A-----------------------------------------------------------
------------------------------------------------------------
----------------------TTQKAEREVSRMVVVMVGSFCVCYVPYAAFAMYMVN-N
RNH--GLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIM-KMVC------GKA-MTD
ES-DT-CSSQK-TEVSTVS--STQVGPN--------------------------------
-----------------------------------------------------------
>     8=opsin, greensensitive  human (fragment) S07060
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------DLAETVIA-STISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSL
AIISWERWLVVCKPFGNV-RFDAKLAIVGIAFSWIWAAVW-TAPPIF-GWS-----RYWP
HGLKTSCGPDVFSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAIRAVAKQQKES
E-----------------------------------------------------------
------------------------------------------------------------
----------------------STQKAEKEVTRMVVVMVLAFC-----------------
------------------------------------------------------------
------------------------------------------------------------
-----------------------------------------------------------
>     9== K03494   1 human GCP <>[Science232(4747),193-202'86]
MAQQWS-LQRLAGRHPQDS-----YEDSTQ--S-------------------SIFTYTNS
N-----------------------------------STRGPFEGPNY-------------
---HIAPRW---------VYHL-----TSVWMIFVVIASVFTNGLVLAATMKFKKLRHPL
NWILVNLAVADLAETVIA-STISVVNQVY-GYFV--LGHPMCVLEGYTVSLCGITGLWSL
AIISWERWMVVCKPFGNV-RFDAKLAIVGIAFSWIWAAVW-TAPPIF-GWS-----RYWP
HGLKTSCGPDVFSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAIRAVAKQQKES
E-----------------------------------------------------------
------------------------------------------------------------
----------------------STQKAEKEVTRMVVVMVLAFCFCWGPYAFFACFAAA-N
PGY--PFHPLMAALPAFFAKSATIYNPVIYVFMNRQFRNCIL-QLF-------GKK-VDD
GS-EL-SSASK-TEVSSV----SSVSPA--------------------------------
-----------------------------------------------------------
>    10== Z68193   1 human Red Opsin <>[]
MAQQWS-LQRLAGRHPQDS-----YEDSTQ--S-------------------SIFTYTNS
N-----------------------------------STRGPFEGPNY-------------
---HIAPRW---------VYHL-----TSVWMIFVVTASVFTNGLVLAATMKFKKLRHPL
NWILVNLAVADLAETVIA-STISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSL
AIISWERWLVVCKPFGNV-RFDAKLAIVGIAFSWIWSAVW-TAPPIF-GWS-----RYWP
HGLKTSCGPDVFSGSSYPGVQSYMIVLMVTCCIIPLAIIMLCYLQVWLAIRAVAKQQKES
E-----------------------------------------------------------
------------------------------------------------------------
----------------------STQKAEKEVTRMVVVMIFAYCVCWGPYTFFACFAAA-N
PGY--AFHPLMAALPAYFAKSATIYNPVIYVFMNRQFRNCIL-QLF-------GKK-VDD
GS-EL-SSASK-TEVSSV----SSVSPA--------------------------------
-----------------------------------------------------------
>    11== M92036   1 Gecko gecko P521 <retina>[PNAS89,6841-6845'92]
MTEAWNVAVFAARRSRDD-------DDTTR--G-------------------SVFTYTNT
N-----------------------------------NTRGPFEGPNY-------------
---HIAPRW---------VYNL-----VSFFMIIVVIASCFTNGLVLVATAKFKKLRHPL
NWILVNLAFVDLVETLVA-STISVFNQIF-GYFI--LGHPLCVIEGYVVSSCGITGLWSL
AIISWERWFVVCKPFGNI-KFDSKLAIIGIVFSWVWAWGW-SAPPIF-GWS-----RYWP
HGLKTSCGPDVFSGSVELGCQSFMLTLMITCCFLPLFIIIVCYLQVWMAIRAVAAQQKES
E-----------------------------------------------------------
------------------------------------------------------------
----------------------STQKAEREVSRMVVVMIVAFCICWGPYASFVSFAAA-N
PGY--AFHPLAAALPAYFAKSATIYNPVIYVFMNRQFRNCIM-QLF-------GKK-VDD
GS-EA-STTSR-TEVSSVS--NSSVAPA--------------------------------
-----------------------------------------------------------
>    12== M62903   1 chicken visual pigment <>[BBRC173,1212-1217'90]
MA-AWE-AAFAARRRHEE-------EDTTR--D-------------------SVFTYTNS
N-----------------------------------NTRGPFEGPNY-------------
---HIAPRW---------VYNL-----TSVWMIFVVAASVFTNGLVLVATWKFKKLRHPL
NWILVNLAVADLGETVIA-STISVINQIS-GYFI--LGHPMCVVEGYTVSACGITALWSL
AIISWERWFVVCKPFGNI-KFDGKLAVAGILFSWLWSCAW-TAPPIF-GWS-----RYWP
HGLKTSCGPDVFSGSSDPGVQSYMVVLMVTCCFFPLAIIILCYLQVWLAIRAVAAQQKES
E-----------------------------------------------------------
------------------------------------------------------------
----------------------STQKAEKEVSRMVVVMIVAYCFCWGPYTFFACFAAA-N
PGY--AFHPLAAALPAYFAKSATIYNPIIYVFMNRQFRNCIL-QLF-------GKK-VDD
GS-EV-ST-SR-TEVSSVS--NSSVSPA--------------------------------
-----------------------------------------------------------
>    13== S75720   1 chicken P-opsin <>[Science267(5203),1502-1506'95]
-----------------------------M--S-------------------SNSSQAPP
N-----------------------------------GTPGPFDGPQW-------------
--PYQAPQS---------TYVG-----VAVLMGTVVACASVVNGLVIVVSICYKKLRSPL
NYILVNLAVADLLVTLCG-SSVSLSNNIN-GFFV--FGRRMCELEGFMVSLTGIVGLWSL
AILALERYVVVCKPLGDF-QFQRRHAVSGCAFTWGWALLW-SAPPLL-GWS-----SYVP
EGLRTSCGPNWYTGGSN--NNSYILSLFVTCFVLPLSLILFSYTNLLLTLRAAAAQQKEA
D-----------------------------------------------------------
------------------------------------------------------------
----------------------TTQRAEREVTRMVIVMVMAFLLCWLPYSTFALVVAT-H
KGI--IIQPVLASLPSYFSKTATVYNPIIYVFMNKQFQSCLL-EMLCCG--YQPQR-TGK
AS-PG-TPGPH-ADVTAAG-LRNKVMPAHPV-----------------------------
-----------------------------------------------------------
>    14== M17718   1 D.melanogaster Rh3 <>[J.Neurosci.7,1550-1557'87]
----------------MESGNVSSSLFGNV--S-------------------TALR----
---P--------------------------------EARLSA---E---TRLLGWNVPPE
ELRHIPEHWLTYPEPPESMNYL-----LGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPS
NILVINLAFCDFMMM-VK-TPIFIYNSFH-QGYA--LGHLGCQIFGIIGSYTGIAAGATN
AFIAYDRFNVITRPMEG--KMTHGKAIAMIIFIYMYATPW-VVACYTETWG-----RFVP
EGYLTSCTFDYLTDN--FDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKALRDQ
AKKM------------------NVESLRS-------------------------------
------------------------------------------------------------
------------------NVDKNKETAEIRIAKAAITICFLFFCSWTPYGVMSLIGAF-G
DKT--LLTPGATMIPACACKMVACIDPFVYAISHPRYRMELQ-KRCPWL--ALNEK-APE
SS-AV-ASTST-TQEPQQT----TAA----------------------------------
-----------------------------------------------------------
>    15== X65879   1 Drosophila pseudoobscura Dpse\Rh3 <>[Genetics132(1),193-204'92
----------------MEYHNVSSVL-GNV--S-------------------SVLR----
---P--------------------------------DARLSA---E---SRLLGWNVPPD
ELRHIPEHWLIYPEPPESMNYL-----LGTLYIFFTVISMIGNGLVMWVFSAAKSLRTPS
NILVINLAFCDFMMM-IK-TPIFIYNSFH-QGYA--LGHLGCQIFGVIGSYTGIAAGATN
AFIAYDRYNVITRPMEG--KMTHGKAIAMIIFIYLYATPW-VVACYTESWG-----RFVP
EGYLTSCTFDYLTDN--FDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKALRDQ
AKKM------------------NVDSLRS-------------------------------
------------------------------------------------------------
------------------NVDKSKEAAEIRIAKAAITICFLFFASWTPYGVMSLIGAF-G
DKT--LLTPGATMIPACTCKMVACIDPFVYAISHPRYRMELQ-KRCPWL--AISEK-APE
SR-AA-ISTST-TQEQQQT----TAA----------------------------------
-----------------------------------------------------------
>    16== M17730   1 D.melanogaster Rh4 opsin <>[J.Neurosci.7,1558-1566'87]
----------------------MEPLCNAS--E-------------------PPLR----
---P--------------------------------EAR-SSGNGD---LQFLGWNVPPD
QIQYIPEHWLTQLEPPASMHYM-----LGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPS
NMFVLNLAVFDLIMC-LK-APIF--NSFH-RGFAIYLGNTWCQIFASIGSYSGIGAGMTN
AAIGYDRYNVITKPMNR--NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFWD-----RFVP
EGYLTSCSFDYLSDN--FDTRLFVGTIFFFSFVCPTLMILYYYSQIVGHVFSHEKALREQ
AKKM------------------NVESLRS-------------------------------
------------------------------------------------------------
------------------NVDKSKETAEIRIAKAAITICFLFFVSWTPYGVMSLIGAF-G
DKS--LLTQGATMIPACTCKLVACIDPFVYAISHPRYRLELQ-KRCPWL--GVNEK-SGE
IS-SA-QSTTT-QEQQQTT----AA-----------------------------------
-----------------------------------------------------------
>    17== X65880   1 Drosophila pseudoobscura Dpse\Rh4 <>[Genetics132(1),193-204'92
----------------------MDALCNAS--E-------------------PPLR----
---P--------------------------------EARMSSGSDE---LQFLGWNVPPD
QIQYIPEHWLTQLEPPASMHYM-----LGVFYIFLFFASTLGNGMVIWIFSTSKSLRTPS
NMFVLNLAVFDLIMC-LK-APIFIYNSFH-RGFA--LGNTWCQIFASIGSYSGIGAGMTN
AAIGYDRYNVITKPMNR--NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFWD-----RFVP
EGYLTSCSFDYLSDN--FDTRLFVGTIFLFSFVVPTLMILYYYSQIVGHVFNHEKALREQ
AKKM------------------NVESLRS-------------------------------
------------------------------------------------------------
------------------NVDKSKETAEIRIAKAAITICFLFFVSWTPYGVMSLIGAF-G
DKS--LLTPGATMIPACTCKLVACIEPFVYAISHPRYRMELQ-KRCPWL--GVNEK-SGE
AS-SA-QSTTT-QEQTQQT----SAA----------------------------------
-----------------------------------------------------------
>    18== D50584   1 Hemigrapsus sanguineus opsin BcRh2 <compound eye>[J.Exp.Biol.1
-------------------------MTNAT--G-------------------PQMAY---
--YG--------------------------------AASMDFGYPE---GVSIVDFVRPE
IKPYVHQHWYNYPPVNPMWHYL-----LGVIYLFLGTVSIFGNGLVIYLFNKSAALRTPA
NILVVNLALSDLIMLTTN-VPFFTYNCFSGGVWM--FSPQYCEIYACLGAITGVCSIWLL
CMISFDRYNIICNGFNGP-KLTTGKAVVFALISWVIAIGC-ALPPFF-GWG-----NYIL
EGILDSCSYDYLTQD--FNTFSYNIFIFVFDYFLPAAIIVFSYVFIVKAIFAHEAAMRAQ
AKKM------------------NVSTLRS-------------------------------
------------------------------------------------------------
-------------------NEADAQRAEIRIAKTALVNVSLWFICWTPYALISLKGVM-G
DTS--GITPLVSTLPALLAKSCSCYNPFVYAISHPKYRLAIT-QHLPWF--CVHET-ETK
SN-DD-SQSNS-TVAQDKA-----------------------------------------
-----------------------------------------------------------
>    19== D50583   1 Hemigrapsus sanguineus opsin BcRh1 <compound eye>[J.Exp.Biol.1
-------------------------MANVT--G-------------------PQMAF---
--YG--------------------------------SGAATFGYPE---GMTVADFVPDR
VKHMVLDHWYNYPPVNPMWHYL-----LGVVYLFLGVISIAGNGLVIYLYMKSQALKTPA
NMLIVNLALSDLIMLTTN-FPPFCYNCFSGGRWM--FSGTYCEIYAALGAITGVCSIWTL
CMISFDRYNIICNGFNGP-KLTQGKATFMCGLAWVISVGW-SLPPFF-GWG-----SYTL
EGILDSCSYDYFTRD--MNTITYNICIFIFDFFLPASVIVFSYVFIVKAIFAHEAAMRAQ
AKKM------------------NVTNLRS-------------------------------
------------------------------------------------------------
-------------------NEAETQRAEIRIAKTALVNVSLWFICWTPYAAITIQGLL-G
NAE--GITPLLTTLPALLAKSCSCYNPFVYAISHPKFRLAIT-QHLPWF--CVHEK-DPN
DV-EE-NQSSN-TQTQEKS-----------------------------------------
-----------------------------------------------------------
>    20== K02320   1 D.melanogaster opsin <>[Cell40,851-858'85]
----------------MES---FAVAAAQL--G-------------------PHFA----
--------------------------------------PLS--------NGSVVDKVTPD
MAHLISPYWNQFPAMDPIWAKI-----LTAYMIMIGMISWCGNGVVIYIFATTKSLRTPA
NLLVINLAISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSM
CMISLDRYQVIVKGMAGR-PMTIPLALGKM---------------------------YVP
EGNLTSCGIDYLERD--WNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQ
AKKM------------------NVKSLRS-------------------------------
------------------------------------------------------------
-------------------SEDAEKSAEGKLAKVALVTITLWFMAWTPYLVINCMGLF-K
F-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALK-EKCPCC--VFGKV-DDG
KS-SD-AQSQA-TASEAES----KA-----------------------------------
-----------------------------------------------------------
>    21== K02315   1 D.melanogaster ninaE <>[Cell40,839-850'85]
----------------MES---FAVAAAQL--G-------------------PHFA----
--------------------------------------PLS--------NGSVVDKVTPD
MAHLISPYWNQFPAMDPIWAKI-----LTAYMIMIGMISWCGNGVVIYIFATTKSLRTPA
NLLVINLAISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSM
CMISLDRYQVIVKGMAGR-PMTIPLALGKIAYIWFMSSIW-CLAPAF-GWS-----RYVP
EGNLTSCGIDYLERD--WNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQ
AKKM------------------NVKSLRS-------------------------------
------------------------------------------------------------
-------------------SEDAEKSAEGKLAKVALVTITLWFMAWTPYLVINCMGLF-K
F-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALK-EKCPCC--VFGKV-DDG
KS-SD-AQSQA-TASEAES----KA-----------------------------------
-----------------------------------------------------------
>    22== X65877   1 Drosophila pseudoobscura Dpse\ninaE <>[Genetics132(1),193-204'
----------------MDS---FAAVATQL--G-------------------PQFA----
--------------------------------------APS--------NGSVVDKVTPD
MAHLISPYWDQFPAMDPIWAKI-----LTAYMIIIGMISWCGNGVVIYIFATTKSLRTPA
NLLVINLAISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSM
CMISLDRYQVIVKGMAGR-PMTIPLALGKIAYIWFMSTIWCCLAPVF-GWS-----RYVP
EGNLTSCGIDYLERD--WNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQ
AKKM------------------NVKSLRS-------------------------------
------------------------------------------------------------
-------------------SEDADKSAEGKLAKVALVTISLWFMAWTPYLVINCMGLF-K
F-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALK-EKCPCC--VFGKV-DDG
KS-SE-AQSQA-TTSEAES----KA-----------------------------------
-----------------------------------------------------------
>    23== M12896   1 D.melanogaster Rh2 <>[Cell44,705-710'86]
-----------MERSHLPE---TPFDLAHS--G-------------------PRFQ----
--------------------------------------AQSSG------NGSVLDNVLPD
MAHLVNPYWSRFAPMDPMMSKI-----LGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPA
NLLVLNLAFSDFCMMASQ-SPVMIINFYY-ETWV--LGPLWCDIYAGCGSLFGCVSIWSM
CMIAFDRYNVIVKGINGT-PMTIKTSIMKILFIWMMAVFW-TVMPLI-GWS-----AYVP
EGNLTACSIDYMTRM--WNPRSYLITYSLFVYYTPLFLICYSYWFIIAAVAAHEKAMREQ
AKKM------------------NVKSLRS-------------------------------
------------------------------------------------------------
-------------------SEDCDKSAEGKLAKVALTTISLWFMAWTPYLVICYFGLF-K
I-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIVLK-EKCPMC--VFGNT-DEP
KP-DA-PASDTETTSEADS----KA-----------------------------------
-----------------------------------------------------------
>    24== X65878   1 Drosophila pseudoobscura Dpse\Rh2 <>[Genetics132(1),193-204'92
-----------MERSLLPE---PPLAMALL--G-------------------PRFE----
--------------------------------------AQTGG------NRSVLDNVLPD
MAPLVNPHWSRFAPMDPTMSKI-----LGLFTLVILIISCCGNGVVVYIFGGTKSLRTPA
NLLVLNLAFSDFCMMASQ-SPVMIINFYY-ETWV--LGPLWCDIYAACGSLFGCVSIWSM
CMIAFDRYNVIVKGINGT-PMTIKTSIMKIAFIWMMAVFW-TIMPLI-GWS-----SYVP
EGNLTACSIDYMTRQ--WNPRSYLITYSLFVYYTPLFMICYSYWFIIATVAAHEKAMRDQ
AKKM------------------NVKSLRS-------------------------------
------------------------------------------------------------
-------------------SEDCDKSAENKLAKVALTTISLWFMAWTPYLIICYFGLF-K
I-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPNDRLVLK-EKCPMC--VCGTT-DEP
KP-DA-PPSDTETTSEAES----KD-----------------------------------
-----------------------------------------------------------
>    25== U26026   1 Apis mellifera long-wavelength rhodopsin <>[]
-------------------------MIAVS--G-------------------PSYE----
--------------------------------------AFSYGGQARFNNQTVVDKVPPD
MLHLIDANWYQYPPLNPMWHGI-----LGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPS
NLFVINLAISNFLMMFCM-SPPMVINCYY-ETWV--LGPLFCQIYAMLGSLFGCGSIWTM
TMIAFDRYNVIVKGLSGK-PLSINGALIRIIAIWLFSLGW-TIAPMF-GWN-----RYVP
EGNMTACGTDYFNRG--LLSASYLVCYGIWVYFVPLFLIIYSYWFIIQAVAAHEKNMREQ
AKKM------------------NVASLRS-------------------------------
------------------------------------------------------------
-------------------SENQNTSAECKLAKVALMTISLWFMAWTPYLVINFSGIF-N
L-V--KISPLFTIWGSLFAKANAVYNPIVYGISHPKYRAALF-AKFPSL--AC-AA-EPS
SD-AV-STTSG-TTTVTDN----EKSNA--------------------------------
-----------------------------------------------------------
>    26== L03781   1 Limulus polyphemus opsin <>[PNAS90,6150-6154'93]
---------------------------MAN--Q-------------------LSYS----
--------------------------------------SLGWPYQP---NASVVDTMPKE
MLYMIHEHWYAFPPMNPLWYSI-----LGVAMIILGIICVLGNGMVIYLMMTTKSLRTPT
NLLVVNLAFSDFCMMAFM-MPTMTSNCFA-ETWI--LGPFMCEVYGMAGSLFGCASIWSM
VMITLDRYNVIVRGMAAA-PLTHKKATLLLLFVWIWSGGW-TILPFF-GWS-----RYVP
EGNLTSCTVDYLTKD--WSSASYVVIYGLAVYFLPLITMIYCYFFIVHAVAEHEKQLREQ
AKKM------------------NVASLRA-------------------------------
------------------------------------------------------------
------------------NADQQKQSAECRLAKVAMMTVGLWFMAWTPYLIISWAGVF-S
SGT--RLTPLATIWGSVFAKANSCYNPIVYGISHPRYKAALY-QRFPSL--ACGSG-ESG
SD-VK-SEASA-TTTMEEK----PKIPEA-------------------------------
-----------------------------------------------------------
>    27== X07797   1 Octopus dofleini rhodopsin <>[FEBS232(1),69-72'88]
---------------------------MVE--S-------------------TTLV----
--------------------------------------NQTWWY-----NPTV-------
---DIHPHWAKFDPIPDAVYYS-----VGIFIGVVGIIGILGNGVVIYLFSKTKSLQTPA
NMFIINLAMSDLSFSAINGFPLKTISAFM-KKWI--FGKVACQLYGLLGGIFGFMSINTM
AMISIDRYNVIGRPMAASKKMSHRRAFLMIIFVWMWSIVW-SVGPVF-NWG-----AYVP
EGILTSCSFDYLSTD--PSTRSFILCMYFCGFMLPIIIIAFCYFNIVMSVSNHEKEMAAM
AKRL------------------NAKELRK-------------------------------
------------------------------------------------------------
-------------------AQ-AGASAEMKLAKISMVIITQFMLSWSPYAIIALLAQF-G
PAE--WVTPYAAELPVLFAKASAIHNPIVYSVSHPKFREAIQ-TTFPWLLTCCQFD-EKE
CE-DA-NDAEE-EVVASER--GGESRDAAQMKEMMAMMQKMQAQQAAYQP---PPPPQGY
PPQGYPPQGAYPPPQGYPPQGYPPQGYPPQGYPPQGAPPQVEAPQGAPPQGVDNQAYQA
>    28== X70498   1 Todarodes pacificus rhodopsin <retina>[FEBS317(1-2),5-11'93]
----------------------------MG--R-------------------DLRD----
--------------------------------------NETWWY-----NPSI-------
---VVHPHWREFDQVPDAVYYS-----LGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPA
NMFIINLAFSDFTFSLVNGFPLMTISCFL-KKWI--FGFAACKVYGFIGGIFGFMSIMTM
AMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLW-AIGPIF-GWG-----AYTL
EGVLCNCSFDYISRD--STTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAM
AKRL------------------NAKELRK-------------------------------
------------------------------------------------------------
-------------------AQ-AGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQF-G
PLE--WVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAIS-QTFPWVLTCCQFD-DKE
TE-DD-KDAET-EIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGY
PPQGYPPQGY--PPQGYPPQGYPP---PPQGAPPQGAPP------AAPPQGVDNQAYQA
>    29== L21195   1 human serotonin 5-HT7 receptor protein <placenta and fetal bra
------------------------MMDVNS-SG----RPDLYGHLRSFLLPEVGRGLPDL
SPDG------------GADPVAGSWAPHLLS---EVTASPA---PTW--DA------PPD
NASGCGEQ----INYGRVEKVV-----IGSILTLITLLTIAGNCLVVISVCFVKKLRQPS
NYLIVSLALADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTL
CVISIDRYLGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLF-GWA-----QNVN
DDKVCLISQDF----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF-
-------------PGFPRVEPDSVIALNG-------------------------------
---------------------IVKLQKE------------------VEECAN--------
----------LSRLLKHERKNISIFKREQKAATTLGIIVGAFTVCWLPFFLLSTARPFIC
GTSCSCIPLWVERTFLWLGYANSLINPFIYAFFNRDLRTTYR-SLLQCQ--YRNIN-RKL
SA-AGMHEALKLAERPERPEFVLQNADYCRKK----------------------------
--------------------------------------------------GHDS-----
>    30== L15228   1 rat 5HT-7 serotonin receptor <>[JBC268,18200-18204'93]
------------------------------------------------------------
-------------------------MPHLLSGFLEVTASPA---PTW--DA------PPD
NVSGCGEQ----INYGRVEKVV-----IGSILTLITLLTIAGNCLVVISVSFVKKLRQPS
NYLIVSLALADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTL
CVISIDRYLGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLF-GWA-----QNVN
DDKVCLISQDF----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF-
-------------PGFPRVQPESVISLNG-------------------------------
---------------------VVKLQKE------------------VEECAN--------
----------LSRLLKHERKNISIFKREQKAATTLGIIVGAFTVCWLPFFLLSTARPFIC
GTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRPTSR-SLLQCQ--YRNIN-RKL
SA-AGMHEALKLAERPERSEFVLQNSDHCGKK----------------------------
--------------------------------------------------GHDT-----
>    31=p A47425 serotonin receptor 5HT-7 - rat
------------------------------------------------------------
-------------------------MPHLLSGFLEVTASPA---PTW--DA------PPD
NVSGCGEQ----INYGRVEKVV-----IGSILTLITLLTIAGNCLVVISVSFVKKLRQPS
NYLIVSLALADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTL
CVISIDRYLGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLF-GWA-----QNVN
DDKVCLISQDF----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF-
-------------PGFPRVQPESVISLNG-------------------------------
---------------------VVKLQKE------------------VEECAN--------
----------LSRLLKHERKNISIFKREQKAATTLGIIVGAFTVCWLPFFLLSTARPFIC
GTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRTTYR-SLLQCQ--YRNIN-RKL
SA-AGMHEALKLAERPERSEFVLQNSDHCGKK----------------------------
--------------------------------------------------GHDT-----
>    32== M83181   1 human serotonin receptor <>[JBC267(11),7553-7562'92]
-------------------------MDVLS-PG---------------------------
------------------------------------QGNNT--------TSPPAPFETGG
NTTGIS-------DVTVSYQVI-----TSLLLGTLIFCAVLGNACVVAAIALERSLQNVA
NYLIGSLAVTDLMVSVLV-LPMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHL
CAIALDRYWAITDPIDYVNKRTPRRAAALISLTWLIGFLI-SIPPML-GWRTPEDRSDPD
---ACTISKDH----------GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRKTVKK
VEKTGADTRHGASPAPQPKK-----SVNG--ESGSRNWRLGVESKAGGALCANGAVRQGD
DGAAL--EVIEVHRVGNSKEHLPLPSEAGPTPCAPAS------------------FERKN
ERNA-------------EAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-C
ESSC-HMPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFK-KIIKCK--FCRQ-----
------------------------------------------------------------
-----------------------------------------------------------
>    33=p A35181 serotonin receptor class 1A - rat
-------------------------MDVFS-FG---------------------------
------------------------------------QGNNT--------TASQEPFGTGG
NVTSIS-------DVTFSYQVI-----TSLLLGTLIFCAVLGNACVVAAIALERSLQNVA
NYLIGSLAVTDLMVSVLV-LPMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHL
CAIALDRYWAITDPIDYVNKRTPRRAAALISLTWLIGFLI-SIPPML-GWRTPEDRSDPD
---ACTISKDH----------GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRKTVRK
VEKKGAGTSLGTSSAPPPKK-----SLNG--QPGSGDWRRCAENRAVGTPCTNGAVRQGD
DEATL--EVIEVHRVGNSKEHLPLPSESGSNSYAPAC------------------LERKN
ERNA-------------EAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-C
ESSC-HMPALLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFK-KIIKCK--FCRR-----
------------------------------------------------------------
-----------------------------------------------------------
>    34== L06803   1 Lymnaea stagnalis serotonin receptor <>[PNAS90,11-15'93]
---------------MANFTFGDLALDVAR-MGGLASTPS---GLRS-----TGLTTPGL
SPTGLVTSDFNDSYGLTGQFINGSHSSRSRD---NASANDT--------SATNM---TDD
RYWSLT-------VYSHEHLVL-----TSVILGLFVLCCIIGNCFVIAAVMLERSLHNVA
NYLILSLAVADLMVAVLV-MPLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHL
VAIAMDRYWAVTS-IDYIRRRSARRILLMIMVVWIVALFI-SIPPLF-GWRDPNN--DPD
KTGTCIISQDK----------GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQ
MTKARLKTEETTLVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKN
RAKKLPENANGVNSNSSSSERLKQIQIETAEAFANGCAEEASIAMLERQCNNGKKISSND
TPYS-------------RTREKLELKRERKAARTLAIITGAFLICWLPFFIIALIGPF-V
DPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQ-KILFGK--YRRGH-R--
------------------------------------------------------------
-----------------------------------------------------------
>    35=p A47174 serotonin receptor, 5HTlym receptor - great pond snail
---------------MANFTFGDLALDVAR-MGGLASTPS---GLRS-----TGLTTPGL
SPTGLVTSDFNDSYGLTGQFINGSHSSRSRD---NASANDT--------SATNM---TDD
RYWSLT-------VYSHEHLVL-----TSVILGLFVLCCIIGNCFVIAAVMLERSLHNVA
NYLILSLAVADLMVAVLV-MPLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHL
VAIAMDRYWAVTS-IDYIRRRSARRILLMIMVVWIVALFI-SIPPLF-GWRDPNN--DPD
KTGTCIISQDK----------GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQ
MTKARLKTEETTLVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKN
RAKKLPENANGVNSNSSSSERLKQIQIETAEAFANGCAEEASIAMLERQCNNGKKISSND
TPYS-------------RTREKLELKRERKAARTLAIITGAFLICWLPFFIIALIGPF-V
DPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQ-KILFGK--YRRGH-R--
------------------------------------------------------------
-----------------------------------------------------------
>    36== X95604   1 Bombyx mori serotonin receptor <antennae>[InsectBiochem.Mol.Bi
----------------MEGAEGQEELDWEA-LY---------------------LRLP--
-----------------------------LQ---NCSWNSTGWEPNW--NVTVV---PNT
TWWQAS-------APFDTPAALVRAAAKAVVLGLLILATVVGNVFVIAAILLERHLRSAA
NNLILSLAVADLLVACLV-MPLGAVYEVV-QRWT--LGPELCDMWTSGDVLCCTASILHL
VAIALDRYWAVTN-IDYIHASTAKRVGMMIACVWTVSFFV-CIAQLL-GWKDPDWNQRVS
EDLRCVVSQDV----------GYQIFATASSFYVPVLIILILYWRIYQTARKRIRR----
--RRGATARGGVGPPPVPAG---------------------------------GALVAGG
GSGGIAAAVVAV-----IGRPLPTISETTTTGFTNVSSNNTSPE--KQSCANGLEADPPT
TGYGAVAAAYYPSLVRRKPKEAADSKRERKAAKTLAIITGAFVACWLPFFVLAILVPT-C
DCE---VSPVLTSLSLWLGYFNSTLNPVIYTVFSPEFRHAFQ-RLLCGR--RVRRR-RA-
---------------PQ-------------------------------------------
-----------------------------------------------------------