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1 JAMM is a universal peak finder for NGS datasets that can integrate information from biological replicates.
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3 JAMM was developed in the Ohler lab at the Berlin Institute for Medical Systems Biology.
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6 Visit this page for documentation: http://code.google.com/p/jamm-peak-finder/
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9 To install JAMM:
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10 - Make sure you are on a Linux system
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11 - Make sure you have R and Perl installed
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12 - Install the following R packages: sqldf, signal, mclust
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15 To get information about options available to JAMM users, run the JAMM bash script without any parameters.
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18 If you encounter errors or have questions, please email mahmoud.ibrahim@mdc-berlin.de or post at the JAMM Google groups page: https://groups.google.com/forum/#!forum/jamm-peak-finder
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21 Thank you.
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