Mercurial > repos > messersc > jamm

view readme @ 1:243f75d0ed6e draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded. Includes new release 1.0.7 with fixed optional controls.
author messersc
date Thu, 19 Feb 2015 05:39:45 -0500
parents
children
line wrap: on
line source

JAMM is a universal peak finder for NGS datasets that can integrate information from biological replicates. 

JAMM was developed in the Ohler lab at the Berlin Institute for Medical Systems Biology.


Visit this page for documentation: http://code.google.com/p/jamm-peak-finder/


To install JAMM:
- Make sure you are on a Linux system
- Make sure you have R and Perl installed
- Install the following R packages: sqldf, signal, mclust 


To get information about options available to JAMM users, run the JAMM bash script without any parameters.


If you encounter errors or have questions, please email mahmoud.ibrahim@mdc-berlin.de or post at the JAMM Google groups page: https://groups.google.com/forum/#!forum/jamm-peak-finder


Thank you.