Mercurial > repos > melissacline > xena_get_dataset
annotate xenaGetDataset/xenaGetDataset.xml @ 1:bf4a5e41adbc default tip
Added the missing requirement object in the XML tool wrapper
| author | melissacline |
|---|---|
| date | Mon, 15 Sep 2014 16:21:28 -0700 |
| parents | aa2ed7c6c09b |
| children |
| rev | line source |
|---|---|
| 0 | 1 <tool id="xenaGetDatasets" description="Fetch the indicated dataset from the Xena database" name="Get Datasets from Xena" version="0.0.1"> |
| 2 <description> | |
| 3 Retrieve the indicated dataset | |
| 4 </description> | |
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bf4a5e41adbc
Added the missing requirement object in the XML tool wrapper
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5 <requirements> |
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bf4a5e41adbc
Added the missing requirement object in the XML tool wrapper
melissacline
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0
diff
changeset
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6 <requirement type="package" version="1.0">installXena</requirement> |
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bf4a5e41adbc
Added the missing requirement object in the XML tool wrapper
melissacline
parents:
0
diff
changeset
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7 </requirements> |
| 0 | 8 <command interpreter="python"> |
| 9 xenaGetDataset.py ${datasetType} ${cohortName} ${datasetName} $outFile | |
| 10 </command> | |
| 11 <inputs> | |
| 12 <param name="datasetType" type="select" label="Dataset Type"> | |
| 13 <option value="genomicMatrix">Genomic Data</option> | |
| 14 <option value="clinicalMatrix">Clinical Data</option> | |
| 15 <option value="mutationVector">Mutation Data</option> | |
| 16 </param> | |
| 17 <param type="text" name="cohortName" label="Cohort (wildcard is %)" optional="false"> | |
| 18 <sanitizer> | |
| 19 <valid> | |
| 20 <add value="%"/> | |
| 21 </valid> | |
| 22 </sanitizer> | |
| 23 </param> | |
| 24 <param type="text" name="datasetName" label="Dataset (wildcard is %)" optional="false"> | |
| 25 <sanitizer> | |
| 26 <valid> | |
| 27 <add value="%"/> | |
| 28 </valid> | |
| 29 </sanitizer> | |
| 30 </param> | |
| 31 </inputs> | |
| 32 <outputs> | |
| 33 <data format="tabular" name="outFile" /> | |
| 34 </outputs> | |
| 35 <help> | |
| 36 Later... | |
| 37 </help> | |
| 38 </tool> |