diff xenaGetDataset/xenaGetDataset.xml @ 0:aa2ed7c6c09b

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/xenaGetDataset/xenaGetDataset.xml	Mon Sep 15 19:13:12 2014 -0400
@@ -0,0 +1,35 @@
+<tool id="xenaGetDatasets" description="Fetch the indicated dataset from the Xena database" name="Get Datasets from Xena" version="0.0.1">
+  <description>
+    Retrieve the indicated dataset
+  </description>
+  <command interpreter="python">
+    xenaGetDataset.py ${datasetType} ${cohortName} ${datasetName} $outFile
+  </command>
+  <inputs>
+    <param name="datasetType" type="select" label="Dataset Type">
+      <option value="genomicMatrix">Genomic Data</option>
+      <option value="clinicalMatrix">Clinical Data</option>
+      <option value="mutationVector">Mutation Data</option>
+    </param>
+    <param type="text" name="cohortName" label="Cohort (wildcard is %)" optional="false">
+      <sanitizer>
+        <valid>
+          <add value="%"/>
+        </valid>
+      </sanitizer>
+    </param>
+    <param type="text" name="datasetName" label="Dataset (wildcard is %)" optional="false">
+      <sanitizer>
+        <valid>
+          <add value="%"/>
+        </valid>
+      </sanitizer>
+    </param>
+  </inputs>
+  <outputs>
+    <data format="tabular" name="outFile" />
+  </outputs>
+  <help>
+    Later...
+  </help>
+</tool>