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1 <tool id="xenaGetDatasets" description="Fetch the indicated dataset from the Xena database" name="Get Datasets from Xena" version="0.0.1">
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2 <description>
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3 Retrieve the indicated dataset
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4 </description>
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5 <command interpreter="python">
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6 xenaGetDataset.py ${datasetType} ${cohortName} ${datasetName} $outFile
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7 </command>
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8 <inputs>
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9 <param name="datasetType" type="select" label="Dataset Type">
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10 <option value="genomicMatrix">Genomic Data</option>
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11 <option value="clinicalMatrix">Clinical Data</option>
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12 <option value="mutationVector">Mutation Data</option>
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13 </param>
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14 <param type="text" name="cohortName" label="Cohort (wildcard is %)" optional="false">
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15 <sanitizer>
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16 <valid>
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17 <add value="%"/>
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18 </valid>
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19 </sanitizer>
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20 </param>
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21 <param type="text" name="datasetName" label="Dataset (wildcard is %)" optional="false">
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22 <sanitizer>
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23 <valid>
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24 <add value="%"/>
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25 </valid>
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26 </sanitizer>
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27 </param>
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28 </inputs>
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29 <outputs>
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30 <data format="tabular" name="outFile" />
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31 </outputs>
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32 <help>
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33 Later...
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34 </help>
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35 </tool>
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