view xenaGetDataset/xenaGetDataset.xml @ 1:bf4a5e41adbc default tip

Added the missing requirement object in the XML tool wrapper

<tool id="xenaGetDatasets" description="Fetch the indicated dataset from the Xena database" name="Get Datasets from Xena" version="0.0.1">
  <description>
    Retrieve the indicated dataset
  </description>
  <requirements>
    <requirement type="package" version="1.0">installXena</requirement>
  </requirements>
  <command interpreter="python">
    xenaGetDataset.py ${datasetType} ${cohortName} ${datasetName} $outFile
  </command>
  <inputs>
    <param name="datasetType" type="select" label="Dataset Type">
      <option value="genomicMatrix">Genomic Data</option>
      <option value="clinicalMatrix">Clinical Data</option>
      <option value="mutationVector">Mutation Data</option>
    </param>
    <param type="text" name="cohortName" label="Cohort (wildcard is %)" optional="false">
      <sanitizer>
        <valid>
          <add value="%"/>
        </valid>
      </sanitizer>
    </param>
    <param type="text" name="datasetName" label="Dataset (wildcard is %)" optional="false">
      <sanitizer>
        <valid>
          <add value="%"/>
        </valid>
      </sanitizer>
    </param>
  </inputs>
  <outputs>
    <data format="tabular" name="outFile" />
  </outputs>
  <help>
    Later...
  </help>
</tool>