Mercurial > repos > melissacline > xena_get_dataset
comparison xenaGetDataset/xenaGetDataset.xml @ 0:aa2ed7c6c09b
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author | melissacline |
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date | Mon, 15 Sep 2014 19:13:12 -0400 |
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children | bf4a5e41adbc |
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-1:000000000000 | 0:aa2ed7c6c09b |
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1 <tool id="xenaGetDatasets" description="Fetch the indicated dataset from the Xena database" name="Get Datasets from Xena" version="0.0.1"> | |
2 <description> | |
3 Retrieve the indicated dataset | |
4 </description> | |
5 <command interpreter="python"> | |
6 xenaGetDataset.py ${datasetType} ${cohortName} ${datasetName} $outFile | |
7 </command> | |
8 <inputs> | |
9 <param name="datasetType" type="select" label="Dataset Type"> | |
10 <option value="genomicMatrix">Genomic Data</option> | |
11 <option value="clinicalMatrix">Clinical Data</option> | |
12 <option value="mutationVector">Mutation Data</option> | |
13 </param> | |
14 <param type="text" name="cohortName" label="Cohort (wildcard is %)" optional="false"> | |
15 <sanitizer> | |
16 <valid> | |
17 <add value="%"/> | |
18 </valid> | |
19 </sanitizer> | |
20 </param> | |
21 <param type="text" name="datasetName" label="Dataset (wildcard is %)" optional="false"> | |
22 <sanitizer> | |
23 <valid> | |
24 <add value="%"/> | |
25 </valid> | |
26 </sanitizer> | |
27 </param> | |
28 </inputs> | |
29 <outputs> | |
30 <data format="tabular" name="outFile" /> | |
31 </outputs> | |
32 <help> | |
33 Later... | |
34 </help> | |
35 </tool> |