|
0
|
1 <?xml version="1.0"?>
|
|
|
2 <tool_dependency>
|
|
9
|
3 <package name="ontologizer-jar" version="0.0.1">
|
|
8
|
4 <install version="1.0">
|
|
|
5 <actions>
|
|
20
|
6 <action type="shell_command">curl --silent --show-error --output $INSTALL_DIR/ontologizer.jar http://compbio.charite.de/contao/index.php/cmdlineOntologizer.html?file=tl_files/ontologizer/cmdline/Ontologizer.jar</action>
|
|
|
7 <action type="shell_command">echo 'ONTOLOGIZER_JAR=$INSTALL_DIR/ontologizer;export \$ONTOLOGIZER_JAR > $INSTALL_DIR/env.sh'</action>
|
|
8
|
8 </actions>
|
|
|
9 </install>
|
|
|
10 <readme>
|
|
|
11 ontologizer requires java and curl to be installed.
|
|
|
12 </readme>
|
|
|
13 </package>
|
|
6
|
14 <package name="obo-scripts" version="1.0.12">
|
|
0
|
15 <install version="1.0">
|
|
|
16 <actions>
|
|
|
17 <action type="shell_command">git clone http://github.com/cmungall/obo-scripts</action>
|
|
8
|
18 <action type="move_directory_files">
|
|
0
|
19 <source_directory>./</source_directory>
|
|
|
20 <destination_directory>$INSTALL_DIR</destination_directory>
|
|
|
21 </action>
|
|
8
|
22 <action type="set_environment">
|
|
0
|
23 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
|
|
|
24 </action>
|
|
|
25 </actions>
|
|
|
26 </install>
|
|
|
27 <readme>
|
|
8
|
28 obo_scripts require perl to be installed.
|
|
|
29 </readme>
|
|
|
30 </package>
|
|
0
|
31 </tool_dependency>
|
