diff tool_dependencies.xml @ 8:00a5ede354a0

Uploaded
author jorrit
date Tue, 26 Feb 2013 17:45:58 -0500
parents ebf2b433a239
children aebf24eea338
line wrap: on
line diff
--- a/tool_dependencies.xml	Tue Feb 19 18:16:12 2013 -0500
+++ b/tool_dependencies.xml	Tue Feb 26 17:45:58 2013 -0500
@@ -1,20 +1,37 @@
 <?xml version="1.0"?>
 <tool_dependency>
+    <package name="ontologizer" version="0.0.1">
+        <install version="1.0">
+            <actions>
+                <action type="shell_command">curl http://compbio.charite.de/contao/index.php/cmdlineOntologizer.html?file=tl_files/ontologizer/cmdline/Ontologizer.jar > ontologizer.jar</action>
+                <action type="move_directory_files">
+                    <source_directory>./</source_directory>
+                    <destination_directory>$INSTALL_DIR</destination_directory>
+                </action>
+                <action type="set_environment">
+                    <environment_variable name="ONTOLOGIZER_JAR">$INSTALL_DIR/ontologizer.jar</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+            ontologizer requires java and curl to be installed.
+        </readme>
+    </package>
     <package name="obo-scripts" version="1.0.12">
         <install version="1.0">
             <actions>
                 <action type="shell_command">git clone http://github.com/cmungall/obo-scripts</action>
-		<action type="move_directory_files">
+                <action type="move_directory_files">
                     <source_directory>./</source_directory>
                     <destination_directory>$INSTALL_DIR</destination_directory>
                 </action>
-		<action type="set_environment">
+                <action type="set_environment">
                     <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
                 </action>
             </actions>
         </install>
         <readme>
-		obo_scripts require perl to be installed.
-        </readme>
-    </package>
+          obo_scripts require perl to be installed.
+      </readme>
+  </package>
 </tool_dependency>