Mercurial > repos > jorrit > obotools
comparison tool_dependencies.xml @ 8:00a5ede354a0
Uploaded
| author | jorrit |
|---|---|
| date | Tue, 26 Feb 2013 17:45:58 -0500 |
| parents | ebf2b433a239 |
| children | aebf24eea338 |
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| 7:9d9a06b511ff | 8:00a5ede354a0 |
|---|---|
| 1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | 2 <tool_dependency> |
| 3 <package name="ontologizer" version="0.0.1"> | |
| 4 <install version="1.0"> | |
| 5 <actions> | |
| 6 <action type="shell_command">curl http://compbio.charite.de/contao/index.php/cmdlineOntologizer.html?file=tl_files/ontologizer/cmdline/Ontologizer.jar > ontologizer.jar</action> | |
| 7 <action type="move_directory_files"> | |
| 8 <source_directory>./</source_directory> | |
| 9 <destination_directory>$INSTALL_DIR</destination_directory> | |
| 10 </action> | |
| 11 <action type="set_environment"> | |
| 12 <environment_variable name="ONTOLOGIZER_JAR">$INSTALL_DIR/ontologizer.jar</environment_variable> | |
| 13 </action> | |
| 14 </actions> | |
| 15 </install> | |
| 16 <readme> | |
| 17 ontologizer requires java and curl to be installed. | |
| 18 </readme> | |
| 19 </package> | |
| 3 <package name="obo-scripts" version="1.0.12"> | 20 <package name="obo-scripts" version="1.0.12"> |
| 4 <install version="1.0"> | 21 <install version="1.0"> |
| 5 <actions> | 22 <actions> |
| 6 <action type="shell_command">git clone http://github.com/cmungall/obo-scripts</action> | 23 <action type="shell_command">git clone http://github.com/cmungall/obo-scripts</action> |
| 7 <action type="move_directory_files"> | 24 <action type="move_directory_files"> |
| 8 <source_directory>./</source_directory> | 25 <source_directory>./</source_directory> |
| 9 <destination_directory>$INSTALL_DIR</destination_directory> | 26 <destination_directory>$INSTALL_DIR</destination_directory> |
| 10 </action> | 27 </action> |
| 11 <action type="set_environment"> | 28 <action type="set_environment"> |
| 12 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> | 29 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> |
| 13 </action> | 30 </action> |
| 14 </actions> | 31 </actions> |
| 15 </install> | 32 </install> |
| 16 <readme> | 33 <readme> |
| 17 obo_scripts require perl to be installed. | 34 obo_scripts require perl to be installed. |
| 18 </readme> | 35 </readme> |
| 19 </package> | 36 </package> |
| 20 </tool_dependency> | 37 </tool_dependency> |