Mercurial > repos > jorrit > obotools

changeset 20:d75e6bb92a05

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Uploaded
author jorrit
date Tue, 26 Feb 2013 18:58:32 -0500
parents 42695914c1bd
children 452159eb3cd5
files tool_dependencies.xml
diffstat 1 files changed, 2 insertions(+), 8 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Tue Feb 26 18:50:54 2013 -0500
+++ b/tool_dependencies.xml	Tue Feb 26 18:58:32 2013 -0500
@@ -3,14 +3,8 @@
     <package name="ontologizer-jar" version="0.0.1">
         <install version="1.0">
             <actions>
-                <action type="shell_command">curl --silent --show-error --output ./ontologizer.jar http://compbio.charite.de/contao/index.php/cmdlineOntologizer.html?file=tl_files/ontologizer/cmdline/Ontologizer.jar</action>
-                 <action type="move_file">
-                    <source>ontologizer.jar</source>
-                    <destination>$INSTALL_DIR</destination>
-                </action>
-                <action type="set_environment">
-                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
-                </action>
+                <action type="shell_command">curl --silent --show-error --output $INSTALL_DIR/ontologizer.jar http://compbio.charite.de/contao/index.php/cmdlineOntologizer.html?file=tl_files/ontologizer/cmdline/Ontologizer.jar</action>
+                <action type="shell_command">echo 'ONTOLOGIZER_JAR=$INSTALL_DIR/ontologizer;export \$ONTOLOGIZER_JAR > $INSTALL_DIR/env.sh'</action>
             </actions>
         </install>
         <readme>