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annotate tool_dependencies.xml @ 11:e9e4ff80e72b

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Release version 3.0
author Jim Johnson <jj@umn.edu>
date Tue, 18 Sep 2012 09:28:08 -0500
parents 9cd24981dbd2
children 57c46f7fe70b
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <set_environment version="1.0">
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4 <environment_variable name="JAVA_JAR_PATH" action="set_to">$INSTALL_DIR/bin</environment_variable>
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5 </set_environment>
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6 <package name="snpEff" version="3.0">
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7 <install version="1.0">
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8 <actions>
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9 <action type="download_by_url">http://sourceforge.net/projects/snpeff/files/snpEff_v3_0_core.zip</action>
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10 <action type="move_file">
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11 <source>snpEff_v3_0_core.zip</source>
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12 <destination>$INSTALL_DIR</destination>
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13 </action>
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14 <action type="shell_command">unzip snpEff_v3_0_core.zip</action>
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15 <action type="shell_command">ln -s snpEff_3_0 bin</action>
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16 <action type="set_environment">
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17 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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18 </action>
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19 </actions>
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20 </install>
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21 <readme>
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22 </readme>
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23 </package>
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25 </tool_dependency>
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