Mercurial > repos > jjohnson > snpeff_with_dep

diff tool_dependency.xml @ 0:388f178f9e13

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author jjohnson
date Thu, 13 Sep 2012 22:33:33 -0400
parents
children 5248f48fa4ee
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependency.xml	Thu Sep 13 22:33:33 2012 -0400
@@ -0,0 +1,19 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <set_environment version="1.0">
+        <environment_variable name="JAVA_JAR_PATH" action="set_to">$INSTALL_DIR/dist</environment_variable>
+    </set_environment>
+    <package name="snpEff" version="3.0f">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">http://sourceforge.net/projects/snpeff/files/snpEff_latest_core.zip/download</action>
+                <action type="shell_command">mkdir -p $INSTALL_DIR/dist/</action>
+                <action type="shell_command">cp -rp *  $INSTALL_DIR/dist/</action>
+            </actions>
+        </install>
+        <readme>
+        </readme>
+    </package>
+
+</tool_dependency>
+