Mercurial > repos > jjohnson > snpeff_with_dep

view tool_dependency.xml @ 2:5248f48fa4ee

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Add debug actions to tool_dependencies
author Jim Johnson <jj@umn.edu>
date Thu, 13 Sep 2012 21:50:24 -0500
parents 388f178f9e13
children
line wrap: on
line source

<?xml version="1.0"?>
<tool_dependency>
    <set_environment version="1.0">
        <environment_variable name="JAVA_JAR_PATH" action="set_to">$INSTALL_DIR/dist</environment_variable>
    </set_environment>
    <package name="snpEff" version="3.0f">
        <install version="1.0">
            <actions>
                <action type="download_by_url">http://sourceforge.net/projects/snpeff/files/snpEff_latest_core.zip/download</action>
                <action type="shell_command">mkdir -p $INSTALL_DIR/dist/</action>
                <action type="shell_command">pwd</action>
                <action type="shell_command">ls</action>
                <action type="shell_command">cp -rp *  $INSTALL_DIR/dist/</action>
            </actions>
        </install>
        <readme>
        </readme>
    </package>

</tool_dependency>