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view tool_dependencies.xml @ 11:e9e4ff80e72b

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Release version 3.0
author Jim Johnson <jj@umn.edu>
date Tue, 18 Sep 2012 09:28:08 -0500
parents 9cd24981dbd2
children 57c46f7fe70b
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<?xml version="1.0"?>
<tool_dependency>
    <set_environment version="1.0">
        <environment_variable name="JAVA_JAR_PATH" action="set_to">$INSTALL_DIR/bin</environment_variable>
    </set_environment>
    <package name="snpEff" version="3.0">
        <install version="1.0">
            <actions>
                <action type="download_by_url">http://sourceforge.net/projects/snpeff/files/snpEff_v3_0_core.zip</action>
                <action type="move_file">
                    <source>snpEff_v3_0_core.zip</source>
                    <destination>$INSTALL_DIR</destination>
                </action>
                <action type="shell_command">unzip snpEff_v3_0_core.zip</action>
                <action type="shell_command">ln -s snpEff_3_0 bin</action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
        </readme>
    </package>

</tool_dependency>