Mercurial > repos > jjohnson > snpeff_with_dep

diff tool_dependencies.xml @ 9:38b3a6b97bd1

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Add src dir snpEff_3_0 to move_file in tool_dependencies.xml
author Jim Johnson <jj@umn.edu>
date Fri, 14 Sep 2012 14:48:54 -0500
parents 1562bb333568
children 9cd24981dbd2
line wrap: on
line diff
--- a/tool_dependencies.xml	Fri Sep 14 14:18:55 2012 -0500
+++ b/tool_dependencies.xml	Fri Sep 14 14:48:54 2012 -0500
@@ -8,21 +8,21 @@
             <actions>
                 <action type="download_by_url">http://sourceforge.net/projects/snpeff/files/snpEff_latest_core.zip</action>
                 <action type="move_file">
-                    <source>SnpSift.jar</source>
+                    <source>snpEff_3_0/SnpSift.jar</source>
                     <destination>$INSTALL_DIR/bin</destination>
                 </action>
                 <action type="move_file">
-                    <source>snpEff.jar</source>
+                    <source>snpEff_3_0/snpEff.jar</source>
+                    <destination>$INSTALL_DIR/bin</destination>
+                </action>
+                <action type="move_file">
+                    <source>snpEff_3_0/snpEff.config</source>
                     <destination>$INSTALL_DIR/bin</destination>
                 </action>
                 <action type="move_directory_files">
-                    <source_directory>scripts</source_directory>
+                    <source_directory>snpEff_3_0/scripts</source_directory>
                     <destination_directory>$INSTALL_DIR/bin</destination_directory>
                 </action>
-                <action type="move_file">
-                    <source>snpEff.config</source>
-                    <destination>$INSTALL_DIR/bin</destination>
-                </action>
                 <action type="set_environment">
                     <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                 </action>