Mercurial > repos > jjohnson > snpeff_with_dep
comparison tool_dependencies.xml @ 9:38b3a6b97bd1
Add src dir snpEff_3_0 to move_file in tool_dependencies.xml
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Fri, 14 Sep 2012 14:48:54 -0500 |
| parents | 1562bb333568 |
| children | 9cd24981dbd2 |
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| 8:1562bb333568 | 9:38b3a6b97bd1 |
|---|---|
| 6 <package name="snpEff" version="3.0f"> | 6 <package name="snpEff" version="3.0f"> |
| 7 <install version="1.0"> | 7 <install version="1.0"> |
| 8 <actions> | 8 <actions> |
| 9 <action type="download_by_url">http://sourceforge.net/projects/snpeff/files/snpEff_latest_core.zip</action> | 9 <action type="download_by_url">http://sourceforge.net/projects/snpeff/files/snpEff_latest_core.zip</action> |
| 10 <action type="move_file"> | 10 <action type="move_file"> |
| 11 <source>SnpSift.jar</source> | 11 <source>snpEff_3_0/SnpSift.jar</source> |
| 12 <destination>$INSTALL_DIR/bin</destination> | 12 <destination>$INSTALL_DIR/bin</destination> |
| 13 </action> | 13 </action> |
| 14 <action type="move_file"> | 14 <action type="move_file"> |
| 15 <source>snpEff.jar</source> | 15 <source>snpEff_3_0/snpEff.jar</source> |
| 16 <destination>$INSTALL_DIR/bin</destination> | |
| 17 </action> | |
| 18 <action type="move_file"> | |
| 19 <source>snpEff_3_0/snpEff.config</source> | |
| 16 <destination>$INSTALL_DIR/bin</destination> | 20 <destination>$INSTALL_DIR/bin</destination> |
| 17 </action> | 21 </action> |
| 18 <action type="move_directory_files"> | 22 <action type="move_directory_files"> |
| 19 <source_directory>scripts</source_directory> | 23 <source_directory>snpEff_3_0/scripts</source_directory> |
| 20 <destination_directory>$INSTALL_DIR/bin</destination_directory> | 24 <destination_directory>$INSTALL_DIR/bin</destination_directory> |
| 21 </action> | |
| 22 <action type="move_file"> | |
| 23 <source>snpEff.config</source> | |
| 24 <destination>$INSTALL_DIR/bin</destination> | |
| 25 </action> | 25 </action> |
| 26 <action type="set_environment"> | 26 <action type="set_environment"> |
| 27 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> | 27 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> |
| 28 </action> | 28 </action> |
| 29 </actions> | 29 </actions> |