annotate Galaxy-Workflow-Region_Motif_Count_Comparison_Combined_Motifs.ga @ 29:c78ebf00379d draft

Add Refinery workflows
author jeremyjliu
date Mon, 05 Jan 2015 22:22:08 -0500
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29
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1 {
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2 "a_galaxy_workflow": "true",
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3 "annotation": "{\n \"refinery_type\": \"analysis\",\n \"refinery_relationships\": [\n {\n \"category\": \"1-1\",\n \"set1\": \"Region 1\",\n \"set2\": \"Region 2\"\n }\n ]\n}",
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4 "format-version": "0.1",
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5 "name": "Region Motif Count Comparison Combined Motifs",
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6 "steps": {
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7 "0": {
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8 "annotation": "",
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12 {
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13 "description": "",
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14 "name": "Region 1"
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15 }
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16 ],
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17 "name": "Input dataset",
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18 "outputs": [],
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29 },
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30 "1": {
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31 "annotation": "",
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35 {
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36 "description": "",
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37 "name": "Region 2"
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38 }
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39 ],
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40 "name": "Input dataset",
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61 },
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62 "inputs": [],
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63 "name": "Region Motif Intersect",
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197 "tool_state": "{\"__page__\": 0, \"__rerun_remap_job_id__\": null, \"input1\": \"null\", \"queries\": \"[{\\\"input2\\\": null, \\\"__index__\\\": 0}]\"}",
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199 "type": "tool",
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200 "user_outputs": []
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201 },
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202 "7": {
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203 "annotation": "",
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204 "id": 7,
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205 "input_connections": {
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206 "input1": {
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207 "id": 4,
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208 "output_name": "out_tab"
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209 },
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210 "queries_0|input2": {
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211 "id": 5,
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212 "output_name": "out_tab"
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213 }
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214 },
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215 "inputs": [],
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216 "name": "Concatenate datasets",
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217 "outputs": [
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218 {
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219 "name": "out_file1",
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220 "type": "input"
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221 }
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222 ],
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223 "position": {
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226 },
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227 "post_job_actions": {},
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228 "tool_errors": null,
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229 "tool_id": "cat1",
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230 "tool_state": "{\"__page__\": 0, \"__rerun_remap_job_id__\": null, \"input1\": \"null\", \"queries\": \"[{\\\"input2\\\": null, \\\"__index__\\\": 0}]\"}",
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231 "tool_version": "1.0.0",
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232 "type": "tool",
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233 "user_outputs": []
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234 },
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235 "8": {
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236 "annotation": "{\n \"out_enriched\": {\n \"name\": \"motifs_enriched\",\n \"description\": \"Motifs enriched in regions 1 versus regions 2.\",\n \"type\": \"tabular\"\n },\n \"out_depleted\": {\n \"name\": \"motifs_depleted\",\n \"description\": \"Motifs depleted in regions 1 versus regions 2.\",\n \"type\": \"tabular\"\n },\n \"out_plots\": {\n \"name\": \"motif_counts_plots\",\n \"description\": \"Summary plots for motifs in regions 1 versus regions 2.\",\n \"type\": \"png\"\n }\n}",
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237 "id": 8,
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238 "input_connections": {
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239 "in_tab_1": {
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240 "id": 6,
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241 "output_name": "out_file1"
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242 },
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243 "in_tab_2": {
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244 "id": 7,
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245 "output_name": "out_file1"
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246 }
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247 },
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248 "inputs": [],
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249 "name": "Region Motif Count Compare",
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250 "outputs": [
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251 {
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252 "name": "out_enriched",
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253 "type": "tabular"
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254 },
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255 {
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256 "name": "out_depleted",
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257 "type": "tabular"
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258 },
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259 {
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260 "name": "out_plots",
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261 "type": "png"
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262 }
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263 ],
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264 "position": {
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267 },
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268 "post_job_actions": {},
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269 "tool_errors": null,
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270 "tool_id": "region_motif_compare",
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271 "tool_state": "{\"in_tab_1\": \"null\", \"db_type\": \"\\\"c\\\"\", \"__rerun_remap_job_id__\": null, \"in_tab_2\": \"null\", \"__page__\": 0}",
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272 "tool_version": "1.0.0",
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273 "type": "tool",
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274 "user_outputs": []
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275 }
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276 }
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277 }