comparison Galaxy-Workflow-Region_Motif_Count_Comparison_Combined_Motifs.ga @ 29:c78ebf00379d draft

Add Refinery workflows
author jeremyjliu
date Mon, 05 Jan 2015 22:22:08 -0500
parents
children
comparison
equal deleted inserted replaced
28:c8783602cbf0 29:c78ebf00379d
1 {
2 "a_galaxy_workflow": "true",
3 "annotation": "{\n \"refinery_type\": \"analysis\",\n \"refinery_relationships\": [\n {\n \"category\": \"1-1\",\n \"set1\": \"Region 1\",\n \"set2\": \"Region 2\"\n }\n ]\n}",
4 "format-version": "0.1",
5 "name": "Region Motif Count Comparison Combined Motifs",
6 "steps": {
7 "0": {
8 "annotation": "",
9 "id": 0,
10 "input_connections": {},
11 "inputs": [
12 {
13 "description": "",
14 "name": "Region 1"
15 }
16 ],
17 "name": "Input dataset",
18 "outputs": [],
19 "position": {
20 "left": 153.73957872390747,
21 "top": 193.73959398269653
22 },
23 "tool_errors": null,
24 "tool_id": null,
25 "tool_state": "{\"name\": \"Region 1\"}",
26 "tool_version": null,
27 "type": "data_input",
28 "user_outputs": []
29 },
30 "1": {
31 "annotation": "",
32 "id": 1,
33 "input_connections": {},
34 "inputs": [
35 {
36 "description": "",
37 "name": "Region 2"
38 }
39 ],
40 "name": "Input dataset",
41 "outputs": [],
42 "position": {
43 "left": 158.68751573562622,
44 "top": 417.69794511795044
45 },
46 "tool_errors": null,
47 "tool_id": null,
48 "tool_state": "{\"name\": \"Region 2\"}",
49 "tool_version": null,
50 "type": "data_input",
51 "user_outputs": []
52 },
53 "2": {
54 "annotation": "",
55 "id": 2,
56 "input_connections": {
57 "in_bed": {
58 "id": 0,
59 "output_name": "output"
60 }
61 },
62 "inputs": [],
63 "name": "Region Motif Intersect",
64 "outputs": [
65 {
66 "name": "out_tab",
67 "type": "tabular"
68 }
69 ],
70 "position": {
71 "left": 391.7256932258606,
72 "top": 144.71181535720825
73 },
74 "post_job_actions": {},
75 "tool_errors": null,
76 "tool_id": "region_motif_intersect",
77 "tool_state": "{\"__page__\": 0, \"db_type\": \"\\\"p\\\"\", \"in_bed\": \"null\", \"__rerun_remap_job_id__\": null}",
78 "tool_version": "1.0.0",
79 "type": "tool",
80 "user_outputs": []
81 },
82 "3": {
83 "annotation": "",
84 "id": 3,
85 "input_connections": {
86 "in_bed": {
87 "id": 0,
88 "output_name": "output"
89 }
90 },
91 "inputs": [],
92 "name": "Region Motif Intersect",
93 "outputs": [
94 {
95 "name": "out_tab",
96 "type": "tabular"
97 }
98 ],
99 "position": {
100 "left": 385.6146092414856,
101 "top": 253.63542985916138
102 },
103 "post_job_actions": {},
104 "tool_errors": null,
105 "tool_id": "region_motif_intersect",
106 "tool_state": "{\"__page__\": 0, \"db_type\": \"\\\"j\\\"\", \"in_bed\": \"null\", \"__rerun_remap_job_id__\": null}",
107 "tool_version": "1.0.0",
108 "type": "tool",
109 "user_outputs": []
110 },
111 "4": {
112 "annotation": "",
113 "id": 4,
114 "input_connections": {
115 "in_bed": {
116 "id": 1,
117 "output_name": "output"
118 }
119 },
120 "inputs": [],
121 "name": "Region Motif Intersect",
122 "outputs": [
123 {
124 "name": "out_tab",
125 "type": "tabular"
126 }
127 ],
128 "position": {
129 "left": 390.7187352180481,
130 "top": 369.72919511795044
131 },
132 "post_job_actions": {},
133 "tool_errors": null,
134 "tool_id": "region_motif_intersect",
135 "tool_state": "{\"__page__\": 0, \"db_type\": \"\\\"p\\\"\", \"in_bed\": \"null\", \"__rerun_remap_job_id__\": null}",
136 "tool_version": "1.0.0",
137 "type": "tool",
138 "user_outputs": []
139 },
140 "5": {
141 "annotation": "",
142 "id": 5,
143 "input_connections": {
144 "in_bed": {
145 "id": 1,
146 "output_name": "output"
147 }
148 },
149 "inputs": [],
150 "name": "Region Motif Intersect",
151 "outputs": [
152 {
153 "name": "out_tab",
154 "type": "tabular"
155 }
156 ],
157 "position": {
158 "left": 393.6874852180481,
159 "top": 490.7014241218567
160 },
161 "post_job_actions": {},
162 "tool_errors": null,
163 "tool_id": "region_motif_intersect",
164 "tool_state": "{\"__page__\": 0, \"db_type\": \"\\\"j\\\"\", \"in_bed\": \"null\", \"__rerun_remap_job_id__\": null}",
165 "tool_version": "1.0.0",
166 "type": "tool",
167 "user_outputs": []
168 },
169 "6": {
170 "annotation": "",
171 "id": 6,
172 "input_connections": {
173 "input1": {
174 "id": 2,
175 "output_name": "out_tab"
176 },
177 "queries_0|input2": {
178 "id": 3,
179 "output_name": "out_tab"
180 }
181 },
182 "inputs": [],
183 "name": "Concatenate datasets",
184 "outputs": [
185 {
186 "name": "out_file1",
187 "type": "input"
188 }
189 ],
190 "position": {
191 "left": 649.4340672492981,
192 "top": 198.9652943611145
193 },
194 "post_job_actions": {},
195 "tool_errors": null,
196 "tool_id": "cat1",
197 "tool_state": "{\"__page__\": 0, \"__rerun_remap_job_id__\": null, \"input1\": \"null\", \"queries\": \"[{\\\"input2\\\": null, \\\"__index__\\\": 0}]\"}",
198 "tool_version": "1.0.0",
199 "type": "tool",
200 "user_outputs": []
201 },
202 "7": {
203 "annotation": "",
204 "id": 7,
205 "input_connections": {
206 "input1": {
207 "id": 4,
208 "output_name": "out_tab"
209 },
210 "queries_0|input2": {
211 "id": 5,
212 "output_name": "out_tab"
213 }
214 },
215 "inputs": [],
216 "name": "Concatenate datasets",
217 "outputs": [
218 {
219 "name": "out_file1",
220 "type": "input"
221 }
222 ],
223 "position": {
224 "left": 654.4687962532043,
225 "top": 410.99655961990356
226 },
227 "post_job_actions": {},
228 "tool_errors": null,
229 "tool_id": "cat1",
230 "tool_state": "{\"__page__\": 0, \"__rerun_remap_job_id__\": null, \"input1\": \"null\", \"queries\": \"[{\\\"input2\\\": null, \\\"__index__\\\": 0}]\"}",
231 "tool_version": "1.0.0",
232 "type": "tool",
233 "user_outputs": []
234 },
235 "8": {
236 "annotation": "{\n \"out_enriched\": {\n \"name\": \"motifs_enriched\",\n \"description\": \"Motifs enriched in regions 1 versus regions 2.\",\n \"type\": \"tabular\"\n },\n \"out_depleted\": {\n \"name\": \"motifs_depleted\",\n \"description\": \"Motifs depleted in regions 1 versus regions 2.\",\n \"type\": \"tabular\"\n },\n \"out_plots\": {\n \"name\": \"motif_counts_plots\",\n \"description\": \"Summary plots for motifs in regions 1 versus regions 2.\",\n \"type\": \"png\"\n }\n}",
237 "id": 8,
238 "input_connections": {
239 "in_tab_1": {
240 "id": 6,
241 "output_name": "out_file1"
242 },
243 "in_tab_2": {
244 "id": 7,
245 "output_name": "out_file1"
246 }
247 },
248 "inputs": [],
249 "name": "Region Motif Count Compare",
250 "outputs": [
251 {
252 "name": "out_enriched",
253 "type": "tabular"
254 },
255 {
256 "name": "out_depleted",
257 "type": "tabular"
258 },
259 {
260 "name": "out_plots",
261 "type": "png"
262 }
263 ],
264 "position": {
265 "left": 904.2639007568359,
266 "top": 285.75696563720703
267 },
268 "post_job_actions": {},
269 "tool_errors": null,
270 "tool_id": "region_motif_compare",
271 "tool_state": "{\"in_tab_1\": \"null\", \"db_type\": \"\\\"c\\\"\", \"__rerun_remap_job_id__\": null, \"in_tab_2\": \"null\", \"__page__\": 0}",
272 "tool_version": "1.0.0",
273 "type": "tool",
274 "user_outputs": []
275 }
276 }
277 }