Mercurial > repos > jeremie > package_breakdancer_1_2_6

changeset 60:658df950d731 draft

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Uploaded
author jeremie
date Tue, 01 Jul 2014 10:55:51 -0400
parents 89af7b353d56
children 1c615a6bb33d
files tool_dependencies.xml
diffstat 1 files changed, 8 insertions(+), 8 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Tue Jul 01 10:19:37 2014 -0400
+++ b/tool_dependencies.xml	Tue Jul 01 10:55:51 2014 -0400
@@ -17,24 +17,24 @@
                     <action type="change_directory">build</action>
                     <action type="shell_command">cmake .. -DCMAKE_BUILD_TYPE=release -DCMAKE_INSTALL_PREFIX=/usr/local</action>
                     <action type="shell_command">make</action>
-                    <action type="move_file">
+                    <!-- <action type="move_file">
                         <source>bin/breakdancer-max</source>
                         <destination>$INSTALL_DIR/bin</destination>
                     </action>
                     <action type="move_file">
                         <source>../perl/bam2cfg.pl</source>
                         <destination>$INSTALL_DIR/bin</destination>
-                    </action>
+                    </action> -->
                     <!-- <action type="download_by_url">http://9ypffrj86h.1fichier.com/breakdancer2vcf.py</action> -->
                     <action type="shell_command">wget https://github.com/ALLBio/allbiotc2/blob/master/breakdancer/breakdancer2vcf.py</action>
-                    <action type="move_file">
+                   <!--  <action type="move_file">
                         <source>breakdancer2vcf.py</source>
                         <destination>$INSTALL_DIR/bin</destination>
-                    </action>
-                    <!-- <action type="move_directory_files">
-                        <source_directory>../../1_2_6</source_directory>
-                        <destination_directory>$INSTALL_DIR/bin</destination_directory>
-                    </action>    -->   
+                    </action> -->
+                    <action type="move_directory_files">
+                        <source_directory>.</source_directory>
+                        <destination_directory>$INSTALL_DIR</destination_directory>
+                    </action>      
                     <action type="set_environment">
                         <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                     </action>