# HG changeset patch
# User jeremie
# Date 1404226551 14400
# Node ID 658df950d7319a99d8ae117181163089d152fe45
# Parent  89af7b353d56536fc712523a8452035e0ef65f5d
Uploaded

diff -r 89af7b353d56 -r 658df950d731 tool_dependencies.xml
--- a/tool_dependencies.xml	Tue Jul 01 10:19:37 2014 -0400
+++ b/tool_dependencies.xml	Tue Jul 01 10:55:51 2014 -0400
@@ -17,24 +17,24 @@
                     <action type="change_directory">build</action>
                     <action type="shell_command">cmake .. -DCMAKE_BUILD_TYPE=release -DCMAKE_INSTALL_PREFIX=/usr/local</action>
                     <action type="shell_command">make</action>
-                    <action type="move_file">
+                    <!-- <action type="move_file">
                         <source>bin/breakdancer-max</source>
                         <destination>$INSTALL_DIR/bin</destination>
                     </action>
                     <action type="move_file">
                         <source>../perl/bam2cfg.pl</source>
                         <destination>$INSTALL_DIR/bin</destination>
-                    </action>
+                    </action> -->
                     <!-- <action type="download_by_url">http://9ypffrj86h.1fichier.com/breakdancer2vcf.py</action> -->
                     <action type="shell_command">wget https://github.com/ALLBio/allbiotc2/blob/master/breakdancer/breakdancer2vcf.py</action>
-                    <action type="move_file">
+                   <!--  <action type="move_file">
                         <source>breakdancer2vcf.py</source>
                         <destination>$INSTALL_DIR/bin</destination>
-                    </action>
-                    <!-- <action type="move_directory_files">
-                        <source_directory>../../1_2_6</source_directory>
-                        <destination_directory>$INSTALL_DIR/bin</destination_directory>
-                    </action>    -->   
+                    </action> -->
+                    <action type="move_directory_files">
+                        <source_directory>.</source_directory>
+                        <destination_directory>$INSTALL_DIR</destination_directory>
+                    </action>      
                     <action type="set_environment">
                         <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                     </action>