Mercurial > repos > jeremie > package_breakdancer_1_2_6
changeset 59:89af7b353d56 draft
Uploaded
author | jeremie |
---|---|
date | Tue, 01 Jul 2014 10:19:37 -0400 |
parents | 82bc3a532efb |
children | 658df950d731 |
files | tool_dependencies.xml |
diffstat | 1 files changed, 3 insertions(+), 16 deletions(-) [+] |
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--- a/tool_dependencies.xml Tue Jul 01 06:25:52 2014 -0400 +++ b/tool_dependencies.xml Tue Jul 01 10:19:37 2014 -0400 @@ -27,26 +27,10 @@ </action> <!-- <action type="download_by_url">http://9ypffrj86h.1fichier.com/breakdancer2vcf.py</action> --> <action type="shell_command">wget https://github.com/ALLBio/allbiotc2/blob/master/breakdancer/breakdancer2vcf.py</action> - <action type="shell_command">ls</action> - <action type="shell_command">pwd</action> - <!-- <action type="change_directory">..</action> - <action type="shell_command">ls</action> - <action type="shell_command">pwd</action> - <action type="change_directory">..</action> - <action type="shell_command">ls</action> - <action type="shell_command">pwd</action> --> <action type="move_file"> <source>breakdancer2vcf.py</source> <destination>$INSTALL_DIR/bin</destination> </action> - <!-- <action type="shell_command">ls</action> - <action type="shell_command">pwd</action> - <action type="change_directory">..</action> - <action type="shell_command">ls</action> - <action type="shell_command">pwd</action> - <action type="change_directory">..</action> - <action type="shell_command">ls</action> - <action type="shell_command">pwd</action> --> <!-- <action type="move_directory_files"> <source_directory>../../1_2_6</source_directory> <destination_directory>$INSTALL_DIR/bin</destination_directory> @@ -54,6 +38,9 @@ <action type="set_environment"> <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> </action> + <action type="set_environment"> + <environment_variable name="BREAKDANCER_BIN" action="prepend_to">$INSTALL_DIR/bin</environment_variable> + </action> </actions> </actions_group> </install>