Mercurial > repos > jeremie > package_breakdancer_1_2_6

annotate tool_dependencies.xml @ 55:b12f27c1911c draft

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author jeremie
date Tue, 01 Jul 2014 05:41:37 -0400
parents c1e06ae139e6
children 66b145be8b33
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="breakdancer" version="1.2.6">
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4 <install version="1.0">
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5 <actions_group>
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6 <!-- <actions architecture="i386" os="linux">
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7 <action type="download_by_url">http://depot.galaxyproject.org/package/linux/i386/freebayes/freebayes-0.9.6_9608597d-Linux-i686.tgz</action>
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8 <action type="move_directory_files">
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9 <source_directory>.</source_directory>
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10 <destination_directory>$INSTALL_DIR/bin</destination_directory>
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11 </action>
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12 </actions> -->
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13 <actions>
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14 <action type="shell_command">git clone --recursive https://github.com/genome/breakdancer</action>
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15 <!-- <action type="download_by_url">https://github.com/genome/breakdancer/archive/master.zip</action> -->
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16 <action type="shell_command">mkdir build</action>
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17 <action type="change_directory">build</action>
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18 <action type="shell_command">cmake .. -DCMAKE_BUILD_TYPE=release -DCMAKE_INSTALL_PREFIX=/usr/local</action>
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19 <action type="shell_command">make</action>
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20 <action type="move_file">
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21 <source>bin/breakdancer-max</source>
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22 <destination>$INSTALL_DIR/bin</destination>
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23 </action>
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24 <action type="download_by_url">http://7cv3od97gg.1fichier.com/1_2_6.tar.gz</action>
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25 <action type="shell_command">ls</action>
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26 <action type="shell_command">pwd</action>
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27 <action type="change_directory">..</action>
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28 <action type="shell_command">ls</action>
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29 <action type="shell_command">pwd</action>
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30 <action type="shell_command">..</action>
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31 <action type="shell_command">ls</action>
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32 <action type="shell_command">pwd</action>
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33 <!-- <action type="change_directory">../../1_2_6</action> -->
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34 <action type="move_directory_files">
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35 <source_directory>../../1_2_6</source_directory>
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36 <destination_directory>$INSTALL_DIR/bin</destination_directory>
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37 </action>
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38 <action type="set_environment">
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39 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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40 </action>
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41 </actions>
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42 </actions_group>
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43 </install>
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44 <readme>
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45 </readme>
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46 </package>
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47 </tool_dependency>