Mercurial > repos > jeremie > package_breakdancer_1_2_6

changeset 50:469d6925d15e draft

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Uploaded
author jeremie
date Tue, 01 Jul 2014 04:51:14 -0400
parents 07e48b58cf3d
children 5bb7278d6da6
files tool_dependencies.xml
diffstat 1 files changed, 9 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Fri Jun 27 08:29:54 2014 -0400
+++ b/tool_dependencies.xml	Tue Jul 01 04:51:14 2014 -0400
@@ -11,6 +11,15 @@
                     </action>       
                 </actions>                
                 <actions architecture="x86_64" os="linux">
+                    <action type="download_by_url">https://github.com/genome/breakdancer/archive/master.zip</action>
+                    <action type="shell_command">mkdir build</action>
+                    <action type="change_directory">build</action>
+                    <action type="shell_command">cmake .. -DCMAKE_BUILD_TYPE=release -DCMAKE_INSTALL_PREFIX=/usr/local</action>
+                    <action type="shell_command">make</action>
+                    <action type="move_file">
+                        <source>bin/breakdancer-max</source>
+                        <destination>$INSTALL_DIR/bin</destination>
+                    </action>
                     <action type="download_by_url">http://7cv3od97gg.1fichier.com/1_2_6.tar.gz</action>
                     <action type="move_directory_files">
                         <source_directory>.</source_directory>
@@ -23,8 +32,6 @@
             </actions_group>
         </install>
         <readme>
-FreeBayes requires g++ and the standard C and C++ development libraries.
-Additionally, cmake is required for building the BamTools API.
         </readme>
     </package>
 </tool_dependency>
\ No newline at end of file