annotate tool_dependencies.xml @ 29:c7042bd0bb22 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7 commit 7b8a4ffc823f4dab194f1c629b7e83277dbe4337
author iuc
date Mon, 25 May 2015 22:44:52 -0400
parents 1418d5b1ba34
children 92611fea803c
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
14fc11f1b590 Uploaded
iuc
parents:
diff changeset
1 <?xml version="1.0"?>
14fc11f1b590 Uploaded
iuc
parents:
diff changeset
2 <tool_dependency>
14fc11f1b590 Uploaded
iuc
parents:
diff changeset
3 <package name="zlib" version="1.2.8">
14fc11f1b590 Uploaded
iuc
parents:
diff changeset
4 <repository changeset_revision="03abe628fbe8" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
14fc11f1b590 Uploaded
iuc
parents:
diff changeset
5 </package>
14fc11f1b590 Uploaded
iuc
parents:
diff changeset
6 <package name="readline" version="6.2">
8
74b0a61848cd Uploaded
iuc
parents: 7
diff changeset
7 <repository changeset_revision="4e4f3dc94efa" name="package_readline_6_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
0
14fc11f1b590 Uploaded
iuc
parents:
diff changeset
8 </package>
14fc11f1b590 Uploaded
iuc
parents:
diff changeset
9 <package name="bzlib" version="1.0.6">
23
00d2c3e43807 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7 commit e8e971905f5fce11a99d51b1399af45288389d76
iuc
parents: 22
diff changeset
10 <repository changeset_revision="318cd7b46435" name="package_bzlib_1_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
0
14fc11f1b590 Uploaded
iuc
parents:
diff changeset
11 </package>
14fc11f1b590 Uploaded
iuc
parents:
diff changeset
12 <package name="xz" version="5.0.5">
23
00d2c3e43807 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7 commit e8e971905f5fce11a99d51b1399af45288389d76
iuc
parents: 22
diff changeset
13 <repository changeset_revision="93412ba5fea5" name="package_xz_5_0_5" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
17
407b2e088b3d Uploaded
iuc
parents: 16
diff changeset
14 </package>
23
00d2c3e43807 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7 commit e8e971905f5fce11a99d51b1399af45288389d76
iuc
parents: 22
diff changeset
15 <package name="openssl" version="1.0">
00d2c3e43807 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7 commit e8e971905f5fce11a99d51b1399af45288389d76
iuc
parents: 22
diff changeset
16 <repository changeset_revision="eeb069204cdc" name="package_openssl_1_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
22
25b20b323706 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7 commit 90f0980ded867989e4e3696170d3a2a373aa3197
iuc
parents: 21
diff changeset
17 </package>
0
14fc11f1b590 Uploaded
iuc
parents:
diff changeset
18 <package name="sqlite" version="3.8.3">
23
00d2c3e43807 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7 commit e8e971905f5fce11a99d51b1399af45288389d76
iuc
parents: 22
diff changeset
19 <repository changeset_revision="9ba893c2353f" name="package_sqlite_3_8_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
0
14fc11f1b590 Uploaded
iuc
parents:
diff changeset
20 </package>
14fc11f1b590 Uploaded
iuc
parents:
diff changeset
21 <package name="gdbm" version="1.11">
17
407b2e088b3d Uploaded
iuc
parents: 16
diff changeset
22 <repository changeset_revision="77ea468f199e" name="package_gdbm_1_11" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
0
14fc11f1b590 Uploaded
iuc
parents:
diff changeset
23 </package>
14fc11f1b590 Uploaded
iuc
parents:
diff changeset
24 <package name="ncurses" version="5.9">
7
74d009a2a4cb Uploaded
iuc
parents: 6
diff changeset
25 <repository changeset_revision="c0735727b530" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
0
14fc11f1b590 Uploaded
iuc
parents:
diff changeset
26 </package>
1
d031f8824405 Uploaded
iuc
parents: 0
diff changeset
27 <package name="python" version="2.7">
0
14fc11f1b590 Uploaded
iuc
parents:
diff changeset
28 <install version="1.0">
14fc11f1b590 Uploaded
iuc
parents:
diff changeset
29 <actions>
29
c7042bd0bb22 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7 commit 7b8a4ffc823f4dab194f1c629b7e83277dbe4337
iuc
parents: 28
diff changeset
30 <action type="download_by_url">https://www.python.org/ftp/python/2.7.9/Python-2.7.9.tgz</action>
0
14fc11f1b590 Uploaded
iuc
parents:
diff changeset
31
14fc11f1b590 Uploaded
iuc
parents:
diff changeset
32 <action type="set_environment_for_install">
14fc11f1b590 Uploaded
iuc
parents:
diff changeset
33 <repository changeset_revision="03abe628fbe8" name="package_zlib_1_2_8" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
14fc11f1b590 Uploaded
iuc
parents:
diff changeset
34 <package name="zlib" version="1.2.8" />
14fc11f1b590 Uploaded
iuc
parents:
diff changeset
35 </repository>
8
74b0a61848cd Uploaded
iuc
parents: 7
diff changeset
36 <repository changeset_revision="4e4f3dc94efa" name="package_readline_6_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
0
14fc11f1b590 Uploaded
iuc
parents:
diff changeset
37 <package name="readline" version="6.2" />
14fc11f1b590 Uploaded
iuc
parents:
diff changeset
38 </repository>
23
00d2c3e43807 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7 commit e8e971905f5fce11a99d51b1399af45288389d76
iuc
parents: 22
diff changeset
39 <repository changeset_revision="318cd7b46435" name="package_bzlib_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
0
14fc11f1b590 Uploaded
iuc
parents:
diff changeset
40 <package name="bzlib" version="1.0.6" />
14fc11f1b590 Uploaded
iuc
parents:
diff changeset
41 </repository>
23
00d2c3e43807 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7 commit e8e971905f5fce11a99d51b1399af45288389d76
iuc
parents: 22
diff changeset
42 <repository changeset_revision="93412ba5fea5" name="package_xz_5_0_5" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
0
14fc11f1b590 Uploaded
iuc
parents:
diff changeset
43 <package name="xz" version="5.0.5" />
14fc11f1b590 Uploaded
iuc
parents:
diff changeset
44 </repository>
23
00d2c3e43807 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7 commit e8e971905f5fce11a99d51b1399af45288389d76
iuc
parents: 22
diff changeset
45 <repository changeset_revision="9ba893c2353f" name="package_sqlite_3_8_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
00d2c3e43807 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7 commit e8e971905f5fce11a99d51b1399af45288389d76
iuc
parents: 22
diff changeset
46 <package name="sqlite" version="3.8.3" />
22
25b20b323706 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7 commit 90f0980ded867989e4e3696170d3a2a373aa3197
iuc
parents: 21
diff changeset
47 </repository>
23
00d2c3e43807 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7 commit e8e971905f5fce11a99d51b1399af45288389d76
iuc
parents: 22
diff changeset
48 <repository changeset_revision="eeb069204cdc" name="package_openssl_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
00d2c3e43807 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7 commit e8e971905f5fce11a99d51b1399af45288389d76
iuc
parents: 22
diff changeset
49 <package name="openssl" version="1.0" />
0
14fc11f1b590 Uploaded
iuc
parents:
diff changeset
50 </repository>
17
407b2e088b3d Uploaded
iuc
parents: 16
diff changeset
51 <repository changeset_revision="77ea468f199e" name="package_gdbm_1_11" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
0
14fc11f1b590 Uploaded
iuc
parents:
diff changeset
52 <package name="gdbm" version="1.11" />
14fc11f1b590 Uploaded
iuc
parents:
diff changeset
53 </repository>
7
74d009a2a4cb Uploaded
iuc
parents: 6
diff changeset
54 <repository changeset_revision="c0735727b530" name="package_ncurses_5_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
0
14fc11f1b590 Uploaded
iuc
parents:
diff changeset
55 <package name="ncurses" version="5.9" />
14fc11f1b590 Uploaded
iuc
parents:
diff changeset
56 </repository>
14fc11f1b590 Uploaded
iuc
parents:
diff changeset
57 </action>
23
00d2c3e43807 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7 commit e8e971905f5fce11a99d51b1399af45288389d76
iuc
parents: 22
diff changeset
58 <!-- by default python is not looking af LD_INCLUDE_PATH and Co. -->
00d2c3e43807 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7 commit e8e971905f5fce11a99d51b1399af45288389d76
iuc
parents: 22
diff changeset
59 <action type="shell_command">sed -i -e "s/if host_platform == 'atheos':/if True:/g" setup.py</action>
16
2c52c900e56a Uploaded
iuc
parents: 15
diff changeset
60
20
3f2a853e2ef5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7 commit 40cf370ec93cf9d87210528e6d2426a490fdf852
iuc
parents: 19
diff changeset
61 <action type="autoconf" />
29
c7042bd0bb22 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7 commit 7b8a4ffc823f4dab194f1c629b7e83277dbe4337
iuc
parents: 28
diff changeset
62 <action type="download_file">https://bitbucket.org/pypa/setuptools/get/5.2.tar.bz2</action>
c7042bd0bb22 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7 commit 7b8a4ffc823f4dab194f1c629b7e83277dbe4337
iuc
parents: 28
diff changeset
63 <action type="shell_command">tar -xjf 5.2.tar.bz2</action>
c7042bd0bb22 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7 commit 7b8a4ffc823f4dab194f1c629b7e83277dbe4337
iuc
parents: 28
diff changeset
64 <action type="change_directory">pypa-setuptools-f493e6c4ffd8</action>
3
16add262be4e Uploaded
bgruening
parents: 2
diff changeset
65
23
00d2c3e43807 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7 commit e8e971905f5fce11a99d51b1399af45288389d76
iuc
parents: 22
diff changeset
66 <action type="shell_command">
00d2c3e43807 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7 commit e8e971905f5fce11a99d51b1399af45288389d76
iuc
parents: 22
diff changeset
67 export PATH=$PATH:$INSTALL_DIR/bin &amp;&amp;
8
74b0a61848cd Uploaded
iuc
parents: 7
diff changeset
68 export PYTHONHOME=$INSTALL_DIR &amp;&amp;
74b0a61848cd Uploaded
iuc
parents: 7
diff changeset
69 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR &amp;&amp;
74b0a61848cd Uploaded
iuc
parents: 7
diff changeset
70 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python2.7/site-packages/ &amp;&amp;
74b0a61848cd Uploaded
iuc
parents: 7
diff changeset
71 export PKG_CONFIG_PATH=$PKG_CONFIG_PATH:$INSTALL_DIR/lib/pkgconfig &amp;&amp;
23
00d2c3e43807 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7 commit e8e971905f5fce11a99d51b1399af45288389d76
iuc
parents: 22
diff changeset
72 $INSTALL_DIR/bin/python setup.py install --prefix=$INSTALL_DIR
00d2c3e43807 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7 commit e8e971905f5fce11a99d51b1399af45288389d76
iuc
parents: 22
diff changeset
73 </action>
0
14fc11f1b590 Uploaded
iuc
parents:
diff changeset
74 <action type="set_environment">
23
00d2c3e43807 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7 commit e8e971905f5fce11a99d51b1399af45288389d76
iuc
parents: 22
diff changeset
75 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
00d2c3e43807 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7 commit e8e971905f5fce11a99d51b1399af45288389d76
iuc
parents: 22
diff changeset
76 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
00d2c3e43807 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7 commit e8e971905f5fce11a99d51b1399af45288389d76
iuc
parents: 22
diff changeset
77 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib</environment_variable>
00d2c3e43807 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7 commit e8e971905f5fce11a99d51b1399af45288389d76
iuc
parents: 22
diff changeset
78 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python2.7/site-packages</environment_variable>
00d2c3e43807 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7 commit e8e971905f5fce11a99d51b1399af45288389d76
iuc
parents: 22
diff changeset
79 <environment_variable action="set_to" name="PYTHONHOME">$INSTALL_DIR</environment_variable>
00d2c3e43807 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7 commit e8e971905f5fce11a99d51b1399af45288389d76
iuc
parents: 22
diff changeset
80 <environment_variable action="prepend_to" name="PKG_CONFIG_PATH">$INSTALL_DIR/lib/pkgconfig</environment_variable>
0
14fc11f1b590 Uploaded
iuc
parents:
diff changeset
81 </action>
14fc11f1b590 Uploaded
iuc
parents:
diff changeset
82 </actions>
14fc11f1b590 Uploaded
iuc
parents:
diff changeset
83 </install>
14fc11f1b590 Uploaded
iuc
parents:
diff changeset
84
14fc11f1b590 Uploaded
iuc
parents:
diff changeset
85 <readme>
14fc11f1b590 Uploaded
iuc
parents:
diff changeset
86 The Python programming language version 2.7.
15
fb4199eb67f3 Uploaded
iuc
parents: 14
diff changeset
87
0
14fc11f1b590 Uploaded
iuc
parents:
diff changeset
88 http://www.python.org
14fc11f1b590 Uploaded
iuc
parents:
diff changeset
89 </readme>
14fc11f1b590 Uploaded
iuc
parents:
diff changeset
90
14fc11f1b590 Uploaded
iuc
parents:
diff changeset
91 </package>
14fc11f1b590 Uploaded
iuc
parents:
diff changeset
92 </tool_dependency>