Mercurial > repos > iuc > package_python_2_7

changeset 23:00d2c3e43807 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7 commit e8e971905f5fce11a99d51b1399af45288389d76
author iuc
date Thu, 21 May 2015 22:44:49 -0400
parents 25b20b323706
children b32fe7b978c7
files tool_dependencies.xml
diffstat 1 files changed, 24 insertions(+), 31 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Sun May 17 22:44:21 2015 -0400
+++ b/tool_dependencies.xml	Thu May 21 22:44:49 2015 -0400
@@ -3,39 +3,31 @@
   <package name="zlib" version="1.2.8">
     <repository changeset_revision="03abe628fbe8" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
   </package>
-
   <package name="readline" version="6.2">
     <repository changeset_revision="4e4f3dc94efa" name="package_readline_6_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
   </package>
-
   <package name="bzlib" version="1.0.6">
-    <repository changeset_revision="087298adb1fa" name="package_bzlib_1_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    <repository changeset_revision="318cd7b46435" name="package_bzlib_1_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
   </package>
-
   <package name="xz" version="5.0.5">
-    <repository changeset_revision="6554cb54e83b" name="package_xz_5_0_5" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    <repository changeset_revision="93412ba5fea5" name="package_xz_5_0_5" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
   </package>
-
-  <package name="openssl" version="1.0.1">
-    <repository changeset_revision="2f87040d5ea9" name="package_openssl_1_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <package name="openssl" version="1.0">
+    <repository changeset_revision="eeb069204cdc" name="package_openssl_1_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
   </package>
-
   <package name="sqlite" version="3.8.3">
-    <repository changeset_revision="3ff7aae9ae47" name="package_sqlite_3_8_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    <repository changeset_revision="9ba893c2353f" name="package_sqlite_3_8_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
   </package>
-
   <package name="gdbm" version="1.11">
     <repository changeset_revision="77ea468f199e" name="package_gdbm_1_11" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
   </package>
-
   <package name="ncurses" version="5.9">
     <repository changeset_revision="c0735727b530" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
   </package>
-
   <package name="python" version="2.7">
     <install version="1.0">
       <actions>
-        <action type="download_by_url">https://www.python.org/ftp/python/2.7.7/Python-2.7.7.tgz</action>
+        <action type="download_by_url">https://www.python.org/ftp/python/2.7.9/Python-2.7.9.tgz</action>
 
         <action type="set_environment_for_install">
           <repository changeset_revision="03abe628fbe8" name="package_zlib_1_2_8" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
@@ -44,17 +36,17 @@
           <repository changeset_revision="4e4f3dc94efa" name="package_readline_6_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
             <package name="readline" version="6.2" />
           </repository>
-          <repository changeset_revision="087298adb1fa" name="package_bzlib_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+          <repository changeset_revision="318cd7b46435" name="package_bzlib_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
             <package name="bzlib" version="1.0.6" />
           </repository>
-          <repository changeset_revision="6554cb54e83b" name="package_xz_5_0_5" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+          <repository changeset_revision="93412ba5fea5" name="package_xz_5_0_5" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
             <package name="xz" version="5.0.5" />
           </repository>
-          <repository changeset_revision="2f87040d5ea9" name="package_openssl_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
-            <package name="openssl" version="1.0.1" />
+          <repository changeset_revision="9ba893c2353f" name="package_sqlite_3_8_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+            <package name="sqlite" version="3.8.3" />
           </repository>
-          <repository changeset_revision="3ff7aae9ae47" name="package_sqlite_3_8_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
-            <package name="sqlite" version="3.8.3" />
+          <repository changeset_revision="eeb069204cdc" name="package_openssl_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+            <package name="openssl" version="1.0" />
           </repository>
           <repository changeset_revision="77ea468f199e" name="package_gdbm_1_11" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
             <package name="gdbm" version="1.11" />
@@ -63,29 +55,30 @@
             <package name="ncurses" version="5.9" />
           </repository>
         </action>
+        <!-- by default python is not looking af LD_INCLUDE_PATH and Co. -->
+        <action type="shell_command">sed -i -e "s/if host_platform == 'atheos':/if True:/g" setup.py</action>
 
         <action type="autoconf" />
-
         <action type="download_file">https://bitbucket.org/pypa/setuptools/get/5.2.tar.bz2</action>
         <action type="shell_command">tar -xjf 5.2.tar.bz2</action>
         <action type="change_directory">pypa-setuptools-f493e6c4ffd8</action>
 
-        <action type="shell_command">export PATH=$PATH:$INSTALL_DIR/bin &amp;&amp;
+        <action type="shell_command">
+            export PATH=$PATH:$INSTALL_DIR/bin &amp;&amp;
             export PYTHONHOME=$INSTALL_DIR &amp;&amp;
             export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR &amp;&amp;
             export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python2.7/site-packages/ &amp;&amp;
             export PKG_CONFIG_PATH=$PKG_CONFIG_PATH:$INSTALL_DIR/lib/pkgconfig &amp;&amp;
-            $INSTALL_DIR/bin/python setup.py install --prefix=$INSTALL_DIR</action>
+            $INSTALL_DIR/bin/python setup.py install --prefix=$INSTALL_DIR
+        </action>
         <action type="set_environment">
-          <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
-          <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
-          <environment_variable action="set_to" name="PYTHONHOME">$INSTALL_DIR</environment_variable>
-          <environment_variable action="prepend_to" name="PKG_CONFIG_PATH">$INSTALL_DIR/lib/pkgconfig</environment_variable>
+            <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+            <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
+            <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib</environment_variable>
+            <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python2.7/site-packages</environment_variable>
+            <environment_variable action="set_to" name="PYTHONHOME">$INSTALL_DIR</environment_variable>
+            <environment_variable action="prepend_to" name="PKG_CONFIG_PATH">$INSTALL_DIR/lib/pkgconfig</environment_variable>
         </action>
-
-
-
-
       </actions>
     </install>