Mercurial > repos > iuc > package_python_2_7
diff tool_dependencies.xml @ 23:00d2c3e43807 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7 commit e8e971905f5fce11a99d51b1399af45288389d76
| author | iuc |
|---|---|
| date | Thu, 21 May 2015 22:44:49 -0400 |
| parents | 25b20b323706 |
| children | b32fe7b978c7 |
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--- a/tool_dependencies.xml Sun May 17 22:44:21 2015 -0400 +++ b/tool_dependencies.xml Thu May 21 22:44:49 2015 -0400 @@ -3,39 +3,31 @@ <package name="zlib" version="1.2.8"> <repository changeset_revision="03abe628fbe8" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> - <package name="readline" version="6.2"> <repository changeset_revision="4e4f3dc94efa" name="package_readline_6_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> - <package name="bzlib" version="1.0.6"> - <repository changeset_revision="087298adb1fa" name="package_bzlib_1_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + <repository changeset_revision="318cd7b46435" name="package_bzlib_1_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> - <package name="xz" version="5.0.5"> - <repository changeset_revision="6554cb54e83b" name="package_xz_5_0_5" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + <repository changeset_revision="93412ba5fea5" name="package_xz_5_0_5" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> - - <package name="openssl" version="1.0.1"> - <repository changeset_revision="2f87040d5ea9" name="package_openssl_1_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + <package name="openssl" version="1.0"> + <repository changeset_revision="eeb069204cdc" name="package_openssl_1_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> - <package name="sqlite" version="3.8.3"> - <repository changeset_revision="3ff7aae9ae47" name="package_sqlite_3_8_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + <repository changeset_revision="9ba893c2353f" name="package_sqlite_3_8_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> - <package name="gdbm" version="1.11"> <repository changeset_revision="77ea468f199e" name="package_gdbm_1_11" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> - <package name="ncurses" version="5.9"> <repository changeset_revision="c0735727b530" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> - <package name="python" version="2.7"> <install version="1.0"> <actions> - <action type="download_by_url">https://www.python.org/ftp/python/2.7.7/Python-2.7.7.tgz</action> + <action type="download_by_url">https://www.python.org/ftp/python/2.7.9/Python-2.7.9.tgz</action> <action type="set_environment_for_install"> <repository changeset_revision="03abe628fbe8" name="package_zlib_1_2_8" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> @@ -44,17 +36,17 @@ <repository changeset_revision="4e4f3dc94efa" name="package_readline_6_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> <package name="readline" version="6.2" /> </repository> - <repository changeset_revision="087298adb1fa" name="package_bzlib_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> + <repository changeset_revision="318cd7b46435" name="package_bzlib_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> <package name="bzlib" version="1.0.6" /> </repository> - <repository changeset_revision="6554cb54e83b" name="package_xz_5_0_5" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> + <repository changeset_revision="93412ba5fea5" name="package_xz_5_0_5" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> <package name="xz" version="5.0.5" /> </repository> - <repository changeset_revision="2f87040d5ea9" name="package_openssl_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> - <package name="openssl" version="1.0.1" /> + <repository changeset_revision="9ba893c2353f" name="package_sqlite_3_8_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> + <package name="sqlite" version="3.8.3" /> </repository> - <repository changeset_revision="3ff7aae9ae47" name="package_sqlite_3_8_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> - <package name="sqlite" version="3.8.3" /> + <repository changeset_revision="eeb069204cdc" name="package_openssl_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> + <package name="openssl" version="1.0" /> </repository> <repository changeset_revision="77ea468f199e" name="package_gdbm_1_11" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> <package name="gdbm" version="1.11" /> @@ -63,29 +55,30 @@ <package name="ncurses" version="5.9" /> </repository> </action> + <!-- by default python is not looking af LD_INCLUDE_PATH and Co. --> + <action type="shell_command">sed -i -e "s/if host_platform == 'atheos':/if True:/g" setup.py</action> <action type="autoconf" /> - <action type="download_file">https://bitbucket.org/pypa/setuptools/get/5.2.tar.bz2</action> <action type="shell_command">tar -xjf 5.2.tar.bz2</action> <action type="change_directory">pypa-setuptools-f493e6c4ffd8</action> - <action type="shell_command">export PATH=$PATH:$INSTALL_DIR/bin && + <action type="shell_command"> + export PATH=$PATH:$INSTALL_DIR/bin && export PYTHONHOME=$INSTALL_DIR && export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR && export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python2.7/site-packages/ && export PKG_CONFIG_PATH=$PKG_CONFIG_PATH:$INSTALL_DIR/lib/pkgconfig && - $INSTALL_DIR/bin/python setup.py install --prefix=$INSTALL_DIR</action> + $INSTALL_DIR/bin/python setup.py install --prefix=$INSTALL_DIR + </action> <action type="set_environment"> - <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> - <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable> - <environment_variable action="set_to" name="PYTHONHOME">$INSTALL_DIR</environment_variable> - <environment_variable action="prepend_to" name="PKG_CONFIG_PATH">$INSTALL_DIR/lib/pkgconfig</environment_variable> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> + <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable> + <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib</environment_variable> + <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python2.7/site-packages</environment_variable> + <environment_variable action="set_to" name="PYTHONHOME">$INSTALL_DIR</environment_variable> + <environment_variable action="prepend_to" name="PKG_CONFIG_PATH">$INSTALL_DIR/lib/pkgconfig</environment_variable> </action> - - - - </actions> </install>