Mercurial > repos > iuc > package_openbabel_2_3

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_openbabel_2_3 commit 2e18fe350712147421228210013814bc0aeec120
author iuc
date Tue, 01 Mar 2016 10:42:59 -0500
parents 4ec0d9c57ddd
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="eigen3" version="3.1.3">
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4 <repository changeset_revision="de8798991a6a" name="package_eigen_3_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="openbabel" version="2.3.2">
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7 <install version="1.0">
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8 <actions>
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9 <action sha256sum="4eaca26679aa6cc85ebf96af19191472ac63ca442c36b0427b369c3a25705188" type="download_by_url">https://depot.galaxyproject.org/software/openbabel/openbabel_2.3.2_src_all.tar.gz</action>
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10 <action type="set_environment_for_install">
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11 <repository changeset_revision="de8798991a6a" name="package_eigen_3_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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12 <package name="eigen3" version="3.1.3" />
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13 </repository>
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14 </action>
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15
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16 <!-- Huge hack, to point to the actual python lib path. Cmake gets confused with mixed python versions (2.x and 3.x) and we need to point explicitely to the recent version. -->
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17 <action type="shell_command">cmake . -DPYTHON_BINDINGS=ON -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR -DEIGEN3_INCLUDE_DIR=$EIGEN3_SOURCE_PATH -DPYTHON_LIBRARY=`python -c 'import distutils.sysconfig; print "%s/libpython%s.so" % (distutils.sysconfig.get_config_var("LIBPL"), distutils.sysconfig.get_python_version())'`</action>
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18 <action type="make_install" />
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19 <action type="set_environment">
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20 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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21 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib</environment_variable>
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22 <!-- internal variables for open babel -->
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23 <environment_variable action="set_to" name="BABEL_DATADIR">$INSTALL_DIR/share/openbabel</environment_variable>
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24 <environment_variable action="set_to" name="BABEL_LIBDIR">$INSTALL_DIR/lib/openbabel/2.3.2</environment_variable>
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25 <!-- galaxy variables for other tool wrappers -->
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26 <environment_variable action="set_to" name="OPENBABEL_LIB_DIR">$INSTALL_DIR/lib</environment_variable>
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27 <environment_variable action="set_to" name="OPENBABEL_INCLUDE_DIR">$INSTALL_DIR/include</environment_variable>
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28 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib/</environment_variable>
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29 <environment_variable action="prepend_to" name="CPLUS_INCLUDE_PATH">$INSTALL_DIR/include</environment_variable>
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30 <environment_variable action="prepend_to" name="C_INCLUDE_PATH">$INSTALL_DIR/include</environment_variable>
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31 </action>
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32 </actions>
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33 </install>
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34 <readme>Compiling OpenBabel requires g++ and CMake 2.4+. Optional but required for a few features are the cairo development libraries. OPENBABEL_INCLUDE_DIR and OPENBABEL_LIB_DIR can be accessed from other tool wrappers.</readme>
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35 </package>
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36 </tool_dependency>